The use of bioinfomatics to retrieve sequencing data of wheat and barley polymorphic DNAs for production of reliable DNA markers
Public support
Provider
Ministry of Education, Youth and Sports
Programme
COST
Call for proposals
COST 8 (SMSM2010OC5)
Main participants
—
Contest type
VS - Public tender
Contract ID
1081/2011-320
Alternative language
Project name in Czech
Využití nástrojů bioinformatiky pro hodnocení sekvenčních dat pšenice a ječmene pro vývoj spolehlivých molekulárních markerů.
Annotation in Czech
Cílem projektu je využít potenciál mezináordního kolektivu a aplikovat a zlepšit nástroje bioinformatiky pro analýzu sekvencí rostliného genomu a vývoj DNA markérů. Získat nové informace o sekvenační variabilitě alel a nové postupy na nich validovat.
Scientific branches
R&D category
ZV - Basic research
CEP classification - main branch
EB - Genetics and molecular biology
CEP - secondary branch
IN - Informatics
CEP - another secondary branch
GE - Plant cultivation
OECD FORD - equivalent branches <br>(according to the <a href="http://www.vyzkum.cz/storage/att/E6EF7938F0E854BAE520AC119FB22E8D/Prevodnik_oboru_Frascati.pdf">converter</a>)
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)<br>10603 - Genetics and heredity (medical genetics to be 3)<br>10604 - Reproductive biology (medical aspects to be 3)<br>10605 - Developmental biology<br>10608 - Biochemistry and molecular biology<br>10609 - Biochemical research methods<br>30101 - Human genetics<br>40105 - Horticulture, viticulture<br>40106 - Agronomy, plant breeding and plant protection; (Agricultural biotechnology to be 4.4)
Completed project evaluation
Provider evaluation
V - Vynikající výsledky projektu (s mezinárodním významem atd.)
Project results evaluation
The project was focused on the evaluation, use and application of bioinformatics tools for the analysis and use of sequencing and transkriptomic data, molecular markers. We focused on the use of Ginni-Simpson index and Bayesian probabilistics. Data fileswere analyzed and obtained the original data. Information about the poymorphic DNA sequences were obtained. HRM based markers were introduced.
Solution timeline
Realization period - beginning
May 1, 2010
Realization period - end
Dec 31, 2012
Project status
U - Finished project
Latest support payment
Feb 27, 2012
Data delivery to CEP
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data delivery code
CEP13-MSM-OC-U/01:1
Data delivery date
Jun 28, 2013
Finance
Total approved costs
1,590 thou. CZK
Public financial support
1,500 thou. CZK
Other public sources
0 thou. CZK
Non public and foreign sources
90 thou. CZK