Investigation of plant repetitive DNA by bioinformatic analysis of next-generation sequencing data
Public support
Provider
Ministry of Education, Youth and Sports
Programme
COST
Call for proposals
COST 8 (SMSM2010OC5)
Main participants
—
Contest type
VS - Public tender
Contract ID
1081/2011-320
Alternative language
Project name in Czech
Výzkum repetitivní DNA rostlin pomocí bioinformatické analýzy dat z nové generace sekvenačních technologií
Annotation in Czech
Vývoj bioinformatických metod pro analýzu dat z masivně-paralelního sekvenování genomů rostlin, které umožní komplexní charakterizaci repetitivní DNA. Implementace těchto algoritmů do programů a jejich využití pro studium repetic u vybraných druhů.
Scientific branches
R&D category
ZV - Basic research
CEP classification - main branch
EB - Genetics and molecular biology
CEP - secondary branch
GE - Plant cultivation
CEP - another secondary branch
IN - Informatics
OECD FORD - equivalent branches <br>(according to the <a href="http://www.vyzkum.cz/storage/att/E6EF7938F0E854BAE520AC119FB22E8D/Prevodnik_oboru_Frascati.pdf">converter</a>)
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)<br>10603 - Genetics and heredity (medical genetics to be 3)<br>10604 - Reproductive biology (medical aspects to be 3)<br>10605 - Developmental biology<br>10608 - Biochemistry and molecular biology<br>10609 - Biochemical research methods<br>30101 - Human genetics<br>40105 - Horticulture, viticulture<br>40106 - Agronomy, plant breeding and plant protection; (Agricultural biotechnology to be 4.4)
Completed project evaluation
Provider evaluation
V - Vynikající výsledky projektu (s mezinárodním významem atd.)
Project results evaluation
Our previously developed bioinformatic approaches for comparative analysis of repetitive DNA in plant genomes v^ere applied to investigate repeat composition in 36 species from four famihes of higher plants. Resulting data was published in peer-reviewedinternational journals and computer programs were made publicly available via web server.
Solution timeline
Realization period - beginning
May 1, 2010
Realization period - end
Dec 31, 2012
Project status
U - Finished project
Latest support payment
Feb 27, 2012
Data delivery to CEP
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data delivery code
CEP13-MSM-OC-U/01:1
Data delivery date
Jun 28, 2013
Finance
Total approved costs
3,116 thou. CZK
Public financial support
1,494 thou. CZK
Other public sources
1,622 thou. CZK
Non public and foreign sources
0 thou. CZK