The HLA-net GENE[RATE] pipeline for effective HLA data analysis and its application to 145 population samples from Europe and neighbouring areas
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00023001%3A_____%2F14%3A00059159" target="_blank" >RIV/00023001:_____/14:00059159 - isvavai.cz</a>
Result on the web
<a href="http://onlinelibrary.wiley.com/doi/10.1111/tan.12356/pdf" target="_blank" >http://onlinelibrary.wiley.com/doi/10.1111/tan.12356/pdf</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1111/tan.12356" target="_blank" >10.1111/tan.12356</a>
Alternative languages
Result language
angličtina
Original language name
The HLA-net GENE[RATE] pipeline for effective HLA data analysis and its application to 145 population samples from Europe and neighbouring areas
Original language description
In this review, we present for the first time an integrated version of the GENE[RATE] computer tools which have been developed during the last 5 years to analyse human leukocyte antigen (HLA) data in human populations, as well as the results of their application to a large dataset of 145 HLA-typed population samples from Europe and its two neighbouring areas, North Africa and West Asia, now forming part of the GENE[VA] database. All these computer tools and genetic data are, from now, publicly availablethrough a newly designed bioinformatics platform, HLA-net, here presented as a main achievement of the HLA-NET scientific programme. The GENE[RATE] pipeline offers user-friendly computer tools to estimate allele and haplotype frequencies, to test Hardy-Weinberg equilibrium (HWE), selective neutrality and linkage disequilibrium, to recode HLA data, to convert file formats, to display population frequencies of chosen alleles and haplotypes in selected geographic regions, and to perform ge
Czech name
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Czech description
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Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
EC - Immunology
OECD FORD branch
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Result continuities
Project
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Continuities
N - Vyzkumna aktivita podporovana z neverejnych zdroju
Others
Publication year
2014
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Tissue Antigens
ISSN
0001-2815
e-ISSN
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Volume of the periodical
83
Issue of the periodical within the volume
5
Country of publishing house
US - UNITED STATES
Number of pages
17
Pages from-to
307-323
UT code for WoS article
000334356100001
EID of the result in the Scopus database
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