Progressive alignment of genomic signals by multiple dynamic time warping

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00159816%3A_____%2F15%3A00065650" target="_blank" >RIV/00159816:_____/15:00065650 - isvavai.cz</a>

Alternative codes found

RIV/00216305:26220/15:PU115334

Result on the web

<a href="http://dx.doi.org/10.1016/j.jtbi.2015.08.007" target="_blank" >http://dx.doi.org/10.1016/j.jtbi.2015.08.007</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1016/j.jtbi.2015.08.007" target="_blank" >10.1016/j.jtbi.2015.08.007</a>

Result language

angličtina

Original language name

Progressive alignment of genomic signals by multiple dynamic time warping

Original language description

This paper presents the utilization of progressive alignment principle for positional adjustment of a set of genomic signals with different lengths. The new method of multiple alignment of signals based on dynamic time warping is tested for the purpose of evaluating the similarity of different length genes in phylogenetic studies. Two sets of phylogenetic markers were used to demonstrate the effectiveness of the evaluation of intraspecies and interspecies genetic variability. The part of the proposed method is modification of pairwise alignment of two signals by dynamic time warping with using correlation in a sliding window. The correlation based dynamic time warping allows more accurate alignment dependent on local homologies in sequences without the need of scoring matrix or evolutionary models, because mutual similarities of residues are included in the numerical code of signals. (C) 2015 The Authors. Published by Elsevier Ltd.

Czech name

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Czech description

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Type

J_x - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

CEP classification

FS - Medical facilities, apparatus and equipment

OECD FORD branch

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Project

Result was created during the realization of more than one project. More information in the Projects tab.

Continuities

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year

2015

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

Journal of Theoretical Biology

ISSN

0022-5193

e-ISSN

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Volume of the periodical

385

Issue of the periodical within the volume

NOV

Country of publishing house

GB - UNITED KINGDOM

Number of pages

11

Pages from-to

20-30

UT code for WoS article

000364272900003

EID of the result in the Scopus database

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