PDBe-KB: collaboratively defining the biological context of structural data

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00159816%3A_____%2F22%3A00077741" target="_blank" >RIV/00159816:_____/22:00077741 - isvavai.cz</a>
Alternative codes found
RIV/61989592:15310/22:73611091 RIV/00216224:14310/22:00125998
Result on the web
<a href="https://academic.oup.com/nar/article/50/D1/D534/6424755?login=true#authorNotesSectionTitle" target="_blank" >https://academic.oup.com/nar/article/50/D1/D534/6424755?login=true#authorNotesSectionTitle</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1093/nar/gkab988" target="_blank" >10.1093/nar/gkab988</a>

Result language
angličtina
Original language name
PDBe-KB: collaboratively defining the biological context of structural data
Original language description
The Protein Data Bank in Europe - Knowledge Base (PDBe-KB, https://pdbe-kb.org) is an open collaboration between world-leading specialist data resources contributing functional and biophysical annotations derived from or relevant to the Protein Data Bank (PDB). The goal of PDBe-KB is to place macromolecular structure data in their biological context by developing standardised data exchange formats and integrating functional annotations from the contributing partner resources into a knowledge graph that can provide valuable biological insights. Since we described PDBe-KB in 2019, there have been significant improvements in the variety of available annotation data sets and user functionality. Here, we provide an overview of the consortium, highlighting the addition of annotations such as predicted covalent binders, phosphorylation sites, effects of mutations on the protein structure and energetic local frustration. In addition, we describe a library of reusable web-based visualisation components and introduce new features such as a bulk download data service and a novel superposition service that generates clusters of superposed protein chains weekly for the whole PDB archive.
Czech name
—
Czech description
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Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10608 - Biochemistry and molecular biology

Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year
2022
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

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