Population Genomic Analysis of Diploid-Autopolyploid Species
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216208%3A11310%2F23%3A10477453" target="_blank" >RIV/00216208:11310/23:10477453 - isvavai.cz</a>
Result on the web
<a href="https://doi.org/10.1007/978-1-0716-2561-3_16" target="_blank" >https://doi.org/10.1007/978-1-0716-2561-3_16</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1007/978-1-0716-2561-3_16" target="_blank" >10.1007/978-1-0716-2561-3_16</a>
Alternative languages
Result language
angličtina
Original language name
Population Genomic Analysis of Diploid-Autopolyploid Species
Original language description
This chapter outlines an empirical analysis of genome-wide single-nucleotide polymorphism (SNP) variation and its underlying drivers among multiple natural populations within a diploid-autopolyploid species.The aim is to reconstruct the genetic structure among natural populations of varying ploidy and infer footprints of selection in these populations, framed around specific questions that are typically encountered when analyzing a mixed-ploidy data set,e.g., addressing the relevance of natural whole-genome duplication for speciation and adaptation. We briefly review the options for the analysis of polyploid population genomic data involving variant calling, population structure, demographic history inference, and selection scanning approaches. Further, we provide suggestions for methods and associated software, possible caveats, and examples of their application to mixed-ploidy and autopolyploid data sets.
Czech name
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Czech description
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Classification
Type
C - Chapter in a specialist book
CEP classification
—
OECD FORD branch
10611 - Plant sciences, botany
Result continuities
Project
<a href="/en/project/GA20-22783S" target="_blank" >GA20-22783S: Genome duplication as an imperfect barrier in speciation? Evolutionary drivers and consequences of inter-ploidy introgression in natural populations</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2023
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Book/collection name
Polyploidy: Methods and Protocols
ISBN
978-1-07-162560-6
Number of pages of the result
28
Pages from-to
297-324
Number of pages of the book
515
Publisher name
Humana, New York, NY
Place of publication
New York
UT code for WoS chapter
001077786900017