P3S: Protein Structure Similarity Search
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216208%3A11320%2F13%3A10124114" target="_blank" >RIV/00216208:11320/13:10124114 - isvavai.cz</a>
Result on the web
<a href="http://link.springer.com/chapter/10.1007/978-3-642-36949-0_26" target="_blank" >http://link.springer.com/chapter/10.1007/978-3-642-36949-0_26</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1007/978-3-642-36949-0_26" target="_blank" >10.1007/978-3-642-36949-0_26</a>
Alternative languages
Result language
angličtina
Original language name
P3S: Protein Structure Similarity Search
Original language description
Similarity search in protein structure databases is an important task of computational biology. To reduce the time required to search for similar structures, indexing techniques are being often introduced. However, as the indexing phase is computationally very expensive, it becomes useful only when a large number of searches are expected (so that the expensive indexing cost is amortized by cheaper search cost). This is a typical situation for a public similarity search service. In this article we introduce the P3S web application (http://siret.cz/p3s) allowing, given a query structure, to identify the set of the most similar structures in a database. The result set can be browsed interactively, including visual inspection of the structure superposition, or it can be downloaded as a zip archive. P3S employs the SProt similarity measure and an indexing technique based on the LAESA method, both introduced recently by our group. Together with the measure and the index, the method presents
Czech name
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Czech description
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Classification
Type
D - Article in proceedings
CEP classification
IN - Informatics
OECD FORD branch
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Result continuities
Project
<a href="/en/project/GAP202%2F11%2F0968" target="_blank" >GAP202/11/0968: Large-scale Nonmetric Similarity Search in Complex Domains</a><br>
Continuities
S - Specificky vyzkum na vysokych skolach
Others
Publication year
2013
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
Euro-Par 2012: Parallel Processing Workshops
ISBN
978-3-642-36948-3
ISSN
0302-9743
e-ISSN
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Number of pages
10
Pages from-to
228-237
Publisher name
Springer Berlin Heidelberg
Place of publication
Neuveden
Event location
Rhodes Islands, Greece
Event date
Aug 27, 2012
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
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