Traveler

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216208%3A11320%2F16%3A10328144" target="_blank" >RIV/00216208:11320/16:10328144 - isvavai.cz</a>

Result on the web

<a href="https://github.com/rikiel/TRAVeLer" target="_blank" >https://github.com/rikiel/TRAVeLer</a>

DOI - Digital Object Identifier

—

Result language

angličtina

Original language name

Traveler

Original language description

Traveler is a tool enabling visualization of RNA secondary structure using existing well-defined layout of sufficiently similar RNA structure as a template. Traveler is based on an algorithm which first converts both structures into a tree representation and then uses tree edit distance algorithm to find out minimum sequence of tree edit operations to convert one structure into the other. It couples each tree edit operation with a layout modification operation which is then used to gradually transform the known, template, layout into the target one. Traveler is thus a software tool which accepts a pair of secondary structures and the template image and outputs the target visualization.

Czech name

—

Czech description

—

Type

R - Software

CEP classification

IN - Informatics

OECD FORD branch

—

Project

<a href="/en/project/GA15-00885S" target="_blank" >GA15-00885S: Novel methods for computational prediction and visualization of secondary structures of ribosomal ribonucleic acids - an integrated solution</a><br>

Continuities

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year

2016

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Internal product ID

Traveler 1.0

Technical parameters

command line application, c++

Economical parameters

Free academic software

Owner IČO

00216208

Owner name

Univerzita Karlova v Praze