Study of Electronic Structures and Pigment-Protein Interactions in the Reaction Center of Thermochromatium tepidum with a Dynamic Environment

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216208%3A11320%2F16%3A10333732" target="_blank" >RIV/00216208:11320/16:10333732 - isvavai.cz</a>

Result on the web

<a href="http://dx.doi.org/10.1021/acs.jpcb.6b06628" target="_blank" >http://dx.doi.org/10.1021/acs.jpcb.6b06628</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1021/acs.jpcb.6b06628" target="_blank" >10.1021/acs.jpcb.6b06628</a>

Result language

angličtina

Original language name

Study of Electronic Structures and Pigment-Protein Interactions in the Reaction Center of Thermochromatium tepidum with a Dynamic Environment

Original language description

On the basis of the recently reported X-ray crystal structure of light-harvesting complex 1-reaction center (LH1-RC) complex from Thermochromatium tepidum, we investigate electronic structures and pigment-protein interactions in the RC complex from a theoretical perspective. Hybrid quantum-mechanics/molecular-mechanics methods in combination with molecular dynamics simulations are employed to study environmental effects on excitation energies of RC cofactors with the consideration of a dynamic environment. The environmental effects are found to be essential for electronic structure determination. The special pair, a dimer of bacteriochlorophylls which serves as the primary electron donor in the bacterial RC, is our focus in this work. The first excited state of the special pair is found to have the lowest excitation energy of all molecules in the system, making it the most likely populated site after the excitation transfer. The transition charges from electrostatic potentials and the point dipole approximation have been applied to calculate the electronic coupling between individual pigments and that between the special pair and other pigments. Stronger electronic coupling is obtained between the P-M molecule and the L branch pigments than that between the P-M and the pigments in the M branch. Quantum chemical calculations reveal charge transfer characteristics of the first excited state of the special pair. It follows that charge separation takes place along the L branch in the RC. Spectral densities for all the cofactors are also calculated.

Czech name

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Czech description

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Type

J_x - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

CEP classification

CF - Physical chemistry and theoretical chemistry

OECD FORD branch

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Project

<a href="/en/project/GA14-25752S" target="_blank" >GA14-25752S: Microscopic environmental determinants and self-regulation of photosynthetic energy transfer</a><br>

Continuities

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year

2016

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

Journal of Physical Chemistry B

ISSN

1520-6106

e-ISSN

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Volume of the periodical

120

Issue of the periodical within the volume

38

Country of publishing house

US - UNITED STATES

Number of pages

13

Pages from-to

10046-10058

UT code for WoS article

000384626300002

EID of the result in the Scopus database

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