Processing tracking in jMRUI software for magnetic resonance spectra quantitation reproducibility assurance

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14310%2F17%3A00108758" target="_blank" >RIV/00216224:14310/17:00108758 - isvavai.cz</a>

Alternative codes found

RIV/68081731:_____/17:00474779

Result on the web

<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5260066/" target="_blank" >https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5260066/</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1186/s12859-017-1459-5" target="_blank" >10.1186/s12859-017-1459-5</a>

Result language

angličtina

Original language name

Processing tracking in jMRUI software for magnetic resonance spectra quantitation reproducibility assurance

Original language description

Background: Proton magnetic resonance spectroscopy is a non-invasive measurement technique which provides information about concentrations of up to 20 metabolites participating in intracellular biochemical processes. In order to obtain any metabolic information from measured spectra a processing should be done in specialized software, like jMRUI. The processing is interactive and complex and often requires many trials before obtaining a correct result. This paper proposes a jMRUI enhancement for efficient and unambiguous history tracking and file identification. Results: A database storing all processing steps, parameters and files used in processing was developed for jMRUI. The solution was developed in Java, authors used a SQL database for robust storage of parameters and SHA-256 hash code for unambiguous file identification. The developed system was integrated directly in jMRUI and it will be publically available. A graphical user interface was implemented in order to make the user experience more comfortable. The database operation is invisible from the point of view of the common user, all tracking operations are performed in the background. Conclusions: The implemented jMRUI database is a tool that can significantly help the user to track the processing history performed on data in jMRUI. The created tool is oriented to be user-friendly, robust and easy to use. The database GUI allows the user to browse the whole processing history of a selected file and learn e. g. what processing lead to the results, where the original data are stored, to obtain the list of all processing actions performed on spectra.

Czech name

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Czech description

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Type

J_imp - Article in a specialist periodical, which is included in the Web of Science database

CEP classification

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OECD FORD branch

10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)

Project

—

Continuities

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year

2017

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

BMC Bioinformatics

ISSN

1471-2105

e-ISSN

—

Volume of the periodical

18

Issue of the periodical within the volume

1

Country of publishing house

GB - UNITED KINGDOM

Number of pages

11

Pages from-to

1-11

UT code for WoS article

000397487400003

EID of the result in the Scopus database

2-s2.0-85010842117