Parameters of variability and diversity of tetrameric STRs for practical use in Zlotnicka White and Zlotnicka Spotted pigs

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14310%2F17%3A00113206" target="_blank" >RIV/00216224:14310/17:00113206 - isvavai.cz</a>

Alternative codes found

RIV/62156489:43210/17:43911841

Result on the web

<a href="http://www.ighz.edu.pl/uploaded/FSiBundleContentBlockBundleEntityTranslatableBlockTranslatableFilesElement/filePath/873/str253-264.pdf" target="_blank" >http://www.ighz.edu.pl/uploaded/FSiBundleContentBlockBundleEntityTranslatableBlockTranslatableFilesElement/filePath/873/str253-264.pdf</a>

DOI - Digital Object Identifier

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Result language

angličtina

Original language name

Parameters of variability and diversity of tetrameric STRs for practical use in Zlotnicka White and Zlotnicka Spotted pigs

Original language description

As a goal of this paper, the assessment of genetic variability of Zlotnicka White (ZW) and Zlotnicka Spotted (ZS), was chosen in order to verify the appropriateness of 11 tetrameric Short Tandem Repeats (STRs) panel for use in genetic resources of pigs. Analyses were carried out in sets of 91 ZW and 250 ZS pigs. Seventy-one alleles in ZW and 85 alleles in ZS were detected at all 11 STRs loci. An average number of alleles at locus (MNA) was 6.455 in ZW and 7.727 in ZS. An average number of effective alleles (MNe) was 3.532 in ZW and 3.431 in ZS. Observed heterozygosity Ho was 0.659 in ZW and 0.637 in ZS. On average, polymorphism information content (PIC) reached 0.639 and 0.619 per locus in ZW and ZS. The probability of identity of two independent samples PI using all 11 STRs loci in ZW amounted to 3.118 x 10(-10) and to 5.921 x 10(-10) in ZS while the probability of identity related individuals PISibs was 1.331 x 10(-4) and 1.749 x 10(-4) in ZW and ZS. The power of exclusion for loci combinations when both parents are known, when only one of the parent is known and for two putative parents P1, P2 and P3 were in ZW versus ZS 0.99903 v. 0.99887, 0.97998 v. 0.97654 and 0.99999 v. 0.99998, respectively. Identified estimates of stated parameters illustrate suitability of tetrameric STRs for practical application in the management of genetic resources, verification of parentage and traceability in ZW and ZS. Based on the results, we recommend the panel of tetrameric STRs loci as suitable for parentage, traceability and differentiation of subpopulations in genetic pig resources of similar history. H-e.

Czech name

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Czech description

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Type

J_imp - Article in a specialist periodical, which is included in the Web of Science database

CEP classification

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OECD FORD branch

40200 - Animal and Dairy science

Project

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Continuities

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year

2017

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

ANIMAL SCIENCE PAPERS AND REPORTS

ISSN

0860-4037

e-ISSN

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Volume of the periodical

35

Issue of the periodical within the volume

3

Country of publishing house

PL - POLAND

Number of pages

11

Pages from-to

253-263

UT code for WoS article

000410770400004

EID of the result in the Scopus database

2-s2.0-85029142029