Tracking single channel in protein dynamics

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F10%3A00043248" target="_blank" >RIV/00216224:14330/10:00043248 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Result language
angličtina
Original language name
Tracking single channel in protein dynamics
Original language description
In this paper we present a new approach to the processing of molecule dynamics. The method performs the tracking of a channel in a sequence of molecule snapshots which represent atom positions in the molecule in certain time intervals. The centerline ofthe tracked channel is refined using the Delaunay triangulation from the actual snapshot resulting in a new optimized centerline. This method allows us easily to animate the behaviour of the channel in the sequence. The method can also be used to detectthe channel geometry in snapshots, where recent methods are not able to find this channel. In addition, the method yields information about channel parameters which vary over time. We can evaluate opening and closing of the input channel.
Czech name
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Czech description
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Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year
2010
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

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