R/Bioconductor package for identification of triplex-forming sequences

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F13%3A00068053" target="_blank" >RIV/00216224:14330/13:00068053 - isvavai.cz</a>
Alternative codes found
RIV/00216305:26230/13:PR27155
Result on the web
<a href="http://bioconductor.org/packages/release/bioc/html/triplex.html" target="_blank" >http://bioconductor.org/packages/release/bioc/html/triplex.html</a>
DOI - Digital Object Identifier
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Result language
angličtina
Original language name
R/Bioconductor package for identification of triplex-forming sequences
Original language description
This package provides functions for identification and visualization of potential intramolecular triplex patterns in DNA sequence. The main functionality is to detect the positions of subsequences capable of folding into an intramolecular triplex (H-DNA)in a much larger sequence. The potential H-DNA (triplexes) should be made of as many cannonical nucleotide triplets as possible. The package includes visualization showing the exact base-pairing in 1D, 2D or 3D.
Czech name
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Czech description
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Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year
2013
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Internal product ID
triplex R/Bioconductor package
Technical parameters
Triplex is an R wrapper to previously published software with new search, and visualization functions. Detailed documentation is part of the package, additional information is being published as an application note in Bioinformatics.
Economical parameters
Free software for research in genome annotation, economical parameters cannot be reliably estimated.
Owner IČO
00216305
Owner name
Vysoké učení technické Brno

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