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Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics.

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F16%3A00090614" target="_blank" >RIV/00216224:14330/16:00090614 - isvavai.cz</a>

  • Result on the web

    <a href="http://dx.doi.org/10.2312/vcbm.20161265" target="_blank" >http://dx.doi.org/10.2312/vcbm.20161265</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.2312/vcbm.20161265" target="_blank" >10.2312/vcbm.20161265</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics.

  • Original language description

    The presence of tunnels in protein structures substantially influences their reactivity with other molecules. Therefore, studying their properties and changes over time has been in the scope of biochemists for decades. In this paper we introduce a novel approach for the comparative visualization and exploration of ensembles of tunnels. Our goal is to overcome occlusion problems with traditional tunnel representations while providing users a quick way to navigate through the input dataset and to identify potentially interesting tunnels. First, we unfold the input tunnels to a 2D representation enabling to observe the mutual position of amino acids forming the tunnel surface and the amount of surface they influence. These 2D images are subsequently described by image moments commonly used in image processing. This way we are able to detect similarities and outliers in the dataset, which are visualized as clusters in a scatterplot graph.

  • Czech name

  • Czech description

Classification

  • Type

    D - Article in proceedings

  • CEP classification

    IN - Informatics

  • OECD FORD branch

Result continuities

  • Project

  • Continuities

    S - Specificky vyzkum na vysokych skolach

Others

  • Publication year

    2016

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Article name in the collection

    EG VCBM 2016 Eurographics Workshop on Visual Computing for Biology and Medicine

  • ISBN

    9783038680109

  • ISSN

    2070-5786

  • e-ISSN

  • Number of pages

    10

  • Pages from-to

    0-0

  • Publisher name

    The Eurographics Association

  • Place of publication

    Bergen

  • Event location

    Bergen, Norway

  • Event date

    Jan 1, 2016

  • Type of event by nationality

    WRD - Celosvětová akce

  • UT code for WoS article