Topology Preserving Segmentation Fusion for Cells with Complex Shapes
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F21%3A00118940" target="_blank" >RIV/00216224:14330/21:00118940 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1109/ISBI48211.2021.9433867" target="_blank" >http://dx.doi.org/10.1109/ISBI48211.2021.9433867</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1109/ISBI48211.2021.9433867" target="_blank" >10.1109/ISBI48211.2021.9433867</a>
Alternative languages
Result language
angličtina
Original language name
Topology Preserving Segmentation Fusion for Cells with Complex Shapes
Original language description
We present an algorithm to fuse simply connected segmentation masks of complex and variable shapes that often appear in cell imaging. The algorithm is designed to preserve topology of the input masks and to faithfully represent their protrusions. It works in three main phases: (1) the detection of geodesic ends that correspond to the protrusions, (2) optimal matching of the geodesic ends, and (3) contour averaging of corresponding boundary segments. We show that our algorithm overcomes commonly used pixel-wise fusion algorithms (namely majority voting, SIMPLE, STAPLE, and topology-preserving STAPLE), as well as recently published geometric median shapes in terms of the visual quality of results as well as better representation of protrusions. We demonstrate the performance of our method based on synthetic images as well as real images from the cell segmentation benchmark datasets.
Czech name
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Czech description
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Classification
Type
D - Article in proceedings
CEP classification
—
OECD FORD branch
10200 - Computer and information sciences
Result continuities
Project
<a href="/en/project/GA21-20374S" target="_blank" >GA21-20374S: Segmentation and tracking of cells with complex shapes</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach
Others
Publication year
2021
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
The IEEE International Symposium on Biomedical Imaging
ISBN
9781665412469
ISSN
1945-7928
e-ISSN
1945-8452
Number of pages
4
Pages from-to
204-207
Publisher name
IEEE
Place of publication
Nice
Event location
Nice, France
Event date
Apr 13, 2021
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
000786144100046