Bio-Volumentations: A Python library for augmentation of volumetric image sequences
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F25%3A00140987" target="_blank" >RIV/00216224:14330/25:00140987 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1016/j.softx.2025.102151" target="_blank" >http://dx.doi.org/10.1016/j.softx.2025.102151</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1016/j.softx.2025.102151" target="_blank" >10.1016/j.softx.2025.102151</a>
Alternative languages
Result language
angličtina
Original language name
Bio-Volumentations: A Python library for augmentation of volumetric image sequences
Original language description
Data augmentation is a widely used technique to increase generalization ability of deep learning models, especially when dealing with sparse training data. It is also crucial in biomedical applications, where annotated images are extremely rare due to high image dimensionality and expensive data acquisition processes. However, existing image augmentation toolboxes are not suitable for biomedical applications: they usually only support low-dimensional images or very few annotation types. To address this issue, we developed Bio-Volumentations-a Python library for transforming multidimensional biomedical images with image- and point-based annotations. Thanks to its universality, user-friendly interface, and independence of deep learning toolboxes, it facilitates efficient data preprocessing and augmentation in various computer vision tasks.
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Result continuities
Project
<a href="/en/project/GA21-20374S" target="_blank" >GA21-20374S: Segmentation and tracking of cells with complex shapes</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach<br>I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2025
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
SOFTWAREX
ISSN
2352-7110
e-ISSN
2352-7110
Volume of the periodical
30
Issue of the periodical within the volume
102151
Country of publishing house
NL - THE KINGDOM OF THE NETHERLANDS
Number of pages
6
Pages from-to
1-6
UT code for WoS article
001483646900001
EID of the result in the Scopus database
2-s2.0-105002139478