Multiple factors modulating the formation of toroidal membrane pores

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14740%2F23%3A00132221" target="_blank" >RIV/00216224:14740/23:00132221 - isvavai.cz</a>

Result on the web

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DOI - Digital Object Identifier

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Result language

angličtina

Original language name

Multiple factors modulating the formation of toroidal membrane pores

Original language description

Pore formation and stability in cell membranes play a pivotal role in drug delivery into cells such as bacteria1. Particularly, the stability of toroidal pores — pores with a doughnut-shaped geometry where lipid headgroups cover the pore rim — is primarily regulated by the rim-associated line tension. While molecular simulations are a known tool for screening drug candidates, they can also forecast the potential of new therapeutics to modulate line tension. However, not all models (known as force fields) tailored for biological computer simulations accurately capture the line tension of lipid membrane compositions characteristic of mammalian and bacterial cells. This deficiency eventually hinders the drug design. In this work, we investigate the use of molecular dynamics simulations for the rational design of novel molecules, including antimicrobial peptides known to form pores and translocate across cell membranes3. We first delve into factors like lipid composition, which varies between mammalian and bacterial cells, and the unique solution environment, elaborating on their impact on the line tension. Furthermore, we describe the complete process of toroidal pore formation, its molecular origins, and showcase methods to assess the pore formation by computer simulations using available simulation models.

Czech name

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Czech description

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Type

O - Miscellaneous

CEP classification

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OECD FORD branch

10200 - Computer and information sciences

Project

<a href="/en/project/LX22NPO5103" target="_blank" >LX22NPO5103: National Institute of Virology and Bacteriology</a><br>

Continuities

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year

2023

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů