Web-based bioinformatic tool LYNX: LYmphoid NeXt-generation sequencing data analysis and visualization in hematological malignancies.
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14740%2F23%3A00132767" target="_blank" >RIV/00216224:14740/23:00132767 - isvavai.cz</a>
Result on the web
<a href="https://www.embl.org/about/info/course-and-conference-office/events/can23-01/#vf-tabs__section-programme" target="_blank" >https://www.embl.org/about/info/course-and-conference-office/events/can23-01/#vf-tabs__section-programme</a>
DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
Web-based bioinformatic tool LYNX: LYmphoid NeXt-generation sequencing data analysis and visualization in hematological malignancies.
Original language description
Next-generation sequencing (NGS) is rapidly advancing technology in cancer genomics. The single NGS experiment can replace several laboratory tests and provide requested information about the tumor samples. However, new requirements for bioinformatic tools and computational resources are emerging in diagnostics and research. Following the development of an integrative, targeted NGS panel LYNX, enabling the detection of genetic markers recurring in lymphoid malignancies (PMID: 34082072), we focused on designing a LYNX bioinformatics tool, featuring all necessary analytical steps as well as a user interface (UI) for easy data representation and interpretation. State-of-the art resources were used to achieve our goal, such as React.js, D3.js visualisation library, Integrated Genome Browser and GATK industry standard variant calling pipeline.
Czech name
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Czech description
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Classification
Type
O - Miscellaneous
CEP classification
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OECD FORD branch
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Result continuities
Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2023
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů