Alignment - free Visualization of Metagenomic Data by Genomic Signal Processing
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F16%3APU119021" target="_blank" >RIV/00216305:26220/16:PU119021 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
Alignment - free Visualization of Metagenomic Data by Genomic Signal Processing
Original language description
Alignment-free visualization of metagenomic data without prior knowledge about organism composition is one of the major issues in metagenomic bioinformatics. Such a visualization method must place fragments from one organism in close proximity to each other, be reproducible and with rapidly increasing amount of data also work ideally in linear time. A novel technique fulfilling all of these requirements is introduced in this paper. The method is based on transformation of genomic sequence into phase signal representation with extraction of three Hjorth’s descriptors forming three dimensional space for visualization.
Czech name
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Czech description
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Classification
Type
D - Article in proceedings
CEP classification
IN - Informatics
OECD FORD branch
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Result continuities
Project
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Continuities
S - Specificky vyzkum na vysokych skolach
Others
Publication year
2016
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
Proceedings of the 22nd Conference STUDENT EEICT 2016
ISBN
978-80-214-5350-0
ISSN
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e-ISSN
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Number of pages
3
Pages from-to
247-249
Publisher name
Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních
Place of publication
Brno
Event location
Brno
Event date
Apr 28, 2016
Type of event by nationality
CST - Celostátní akce
UT code for WoS article
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