OPERON-EXPRESSER: The Innovated Gene Expression-based Algorithm for Operon Structures Inference
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F21%3APU141194" target="_blank" >RIV/00216305:26220/21:PU141194 - isvavai.cz</a>
Result on the web
<a href="https://www.fekt.vut.cz/conf/EEICT/archiv/sborniky/EEICT_2021_sbornik_1.pdf" target="_blank" >https://www.fekt.vut.cz/conf/EEICT/archiv/sborniky/EEICT_2021_sbornik_1.pdf</a>
DOI - Digital Object Identifier
—
Alternative languages
Result language
angličtina
Original language name
OPERON-EXPRESSER: The Innovated Gene Expression-based Algorithm for Operon Structures Inference
Original language description
Current biotechnological research of bacterial genomes has huge potential due to the use of next-generation sequencing (NGS) platforms. NGS era opens paths for analysis of data for sufficient description of microorganisms with ecology and biotechnology potential in the future. Although some tools for inference of specific structures in bacterial genomes exist, their pipelines and methodologies are often based only on searching bacterial genome databases and comparison with model microorganisms. This paper deals with the design of a new algorithm for operon structures inference in bacterial genomes. The algorithm combines searching in bacterial databases and gene expression information processing. The algorithm was implemented in R language and tested on Clostridium beijerinckii NRRL B-598. The bacterium is a typical performer in the field of biofuels production due to its ability to produce butanol. Thanks to that this bacterial organism can be of great potential from an ecological and biotechnologica
Czech name
—
Czech description
—
Classification
Type
O - Miscellaneous
CEP classification
—
OECD FORD branch
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Result continuities
Project
—
Continuities
S - Specificky vyzkum na vysokych skolach
Others
Publication year
2021
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů