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Pedobacter fastidiosus sp. nov., isolated from glacial habitats of maritime Antarctica

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F22%3APU144734" target="_blank" >RIV/00216305:26220/22:PU144734 - isvavai.cz</a>

  • Alternative codes found

    RIV/75010330:_____/22:00013828 RIV/00216224:14310/22:00125779

  • Result on the web

    <a href="https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.005309" target="_blank" >https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.005309</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1099/ijsem.0.005309" target="_blank" >10.1099/ijsem.0.005309</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    Pedobacter fastidiosus sp. nov., isolated from glacial habitats of maritime Antarctica

  • Original language description

    Strains P8930(T) and 478 were isolated from Antarctic glaciers located on James Ross Island and King George Island, respectively. They comprised Gram-stain-negative short rod-shaped cells forming pink pigmented colonies and exhibited identical 16S rRNA gene sequences and highly similar MALDI TOF mass spectra, and hence were assigned as representatives of the same species. Phylogenetic analysis based on 16S rRNA gene sequences assigned both isolates to the genus Pedobacter and showed Pedobacter frigidisoli and Pedobacter terrae to be their closest phylogenetic neighbours, with 97.4 and 97.2% 16S rRNA, gene sequence similarities, respectively. These low similarity values were below the threshold similarity value of 98.7%, confirming the delineation of a new bacterial species. Further genomic characterization included whole-genome sequencing accompanied by average nucleotide identity (ANI) and digital DNA-DNA hybridization calculations, and characterization of the genome features. The ANI values between P8930(T) and P. frigidisoli RP-3-11(T) and P. terrae DSM 17933(T) were 79.7 and 77.6%, respectively, and the value between P. frigidisoli RP-3-11(T) and P. terrae DSM 17933(T) was 77.7%, clearly demonstrating the phylogenetic distance and the novelty of strain P8930(T). Further characterization included analysis of cellular fatty acids, quinones and polar lipids, and comprehensive biotyping. All the obtained results proved the separation of strains P8930(T) and 478 from the other validly named Pedobacter species, and confirmed that they represent a new species for which the name Pedobacter fastidiosus sp. nov. is proposed. The type strain is P8930(T) (=CCM 8938(T)=LMG 32098(T)).

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database

  • CEP classification

  • OECD FORD branch

    10606 - Microbiology

Result continuities

  • Project

    Result was created during the realization of more than one project. More information in the Projects tab.

  • Continuities

    S - Specificky vyzkum na vysokych skolach

Others

  • Publication year

    2022

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

  • ISSN

    1466-5026

  • e-ISSN

    1466-5034

  • Volume of the periodical

    72

  • Issue of the periodical within the volume

    4

  • Country of publishing house

    GB - UNITED KINGDOM

  • Number of pages

    9

  • Pages from-to

    1-9

  • UT code for WoS article

    000800144400027

  • EID of the result in the Scopus database