Visualizing Horizontal Gene Transfer Detection in Phylogenetically Divergent Bacteria
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F24%3APU151994" target="_blank" >RIV/00216305:26220/24:PU151994 - isvavai.cz</a>
Result on the web
<a href="https://link.springer.com/chapter/10.1007/978-3-031-64636-2_20" target="_blank" >https://link.springer.com/chapter/10.1007/978-3-031-64636-2_20</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1007/978-3-031-64636-2_20" target="_blank" >10.1007/978-3-031-64636-2_20</a>
Alternative languages
Result language
angličtina
Original language name
Visualizing Horizontal Gene Transfer Detection in Phylogenetically Divergent Bacteria
Original language description
Horizontal Gene Transfer (HGT) plays an important and indispensable role in the evolution of bacterial genomes, serving as a mechanism that contributes to genetic diversity and enables adaptation across phylogenetically distant taxa. This study introduces an analysis tool implemented as an R package for detecting HGT events in diverse bacterial lineages. The tool combines the integration of a heat-map matrix with phylogenetic analysis visualization techniques to enhance the accuracy and efficiency of HGT event detection. We applied it to a diverse set of bacterial genomes from chicken and pig gut and expanded the results with established methods for HGT detection. The findings demonstrate the capability of our visualization techniques to pinpoint HGT events, offering a valuable tool for researchers to explore the intricate dynamics of bacterial genome evolution.
Czech name
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Czech description
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Classification
Type
D - Article in proceedings
CEP classification
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OECD FORD branch
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Result continuities
Project
<a href="/en/project/GA22-16786S" target="_blank" >GA22-16786S: Horizontal gene transfer network in chicken gut microbiome: detection and prediction of antibiotic resistome and mobilome</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2024
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
Lecture Notes in Bioinformatics
ISBN
978-3-031-64636-2
ISSN
1611-3349
e-ISSN
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Number of pages
11
Pages from-to
267-277
Publisher name
Springer Nature
Place of publication
neuveden
Event location
Gran Canaria
Event date
Jul 15, 2024
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
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