Architecture Model for Approximate Tandem Repeat Detection
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26230%2F11%3APU96097" target="_blank" >RIV/00216305:26230/11:PU96097 - isvavai.cz</a>
Alternative codes found
RIV/00216224:14330/11:00050002
Result on the web
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DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
Architecture Model for Approximate Tandem Repeat Detection
Original language description
Algorithms for biological sequence analysis, such as approximate string matching or algorithms for identification of sequence patterns supporting specific structural elements, present good opportunities for hardware acceleration. Implementation of thesealgorithms often results in architectures based on multidimensional arrays of computing elements. Mapping effectively these computational structures on FPGAs remains one of the challenging problems. This paper focuses on a specific hardware architecturefor detection of approximate tandem repeats in sequences. We show how to create a parametrized architecture model combined with an automatic technique that can determine appropriate circuit dimensions with respect to input task parameters and the targetplatform properties.
Czech name
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Czech description
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Classification
Type
D - Article in proceedings
CEP classification
IN - Informatics
OECD FORD branch
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Result continuities
Project
<a href="/en/project/GA204%2F08%2F1560" target="_blank" >GA204/08/1560: In vitro and in silico identification of non-canonical DNA structures in genomic DNA sequences</a><br>
Continuities
Z - Vyzkumny zamer (s odkazem do CEZ)<br>S - Specificky vyzkum na vysokych skolach
Others
Publication year
2011
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
22nd IEEE International Conference on Application-specific Systems, Architectures and Processors
ISBN
978-1-4577-1290-6
ISSN
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e-ISSN
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Number of pages
4
Pages from-to
239-242
Publisher name
IEEE Computer Society
Place of publication
Santa Monica, California
Event location
Santa Monica, California
Event date
Sep 11, 2011
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
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