Metabolic pathways of Pseudomonas fluorescens ICT in the perspective of groundwater remediation
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F46747885%3A24620%2F13%3A%230000379" target="_blank" >RIV/46747885:24620/13:#0000379 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
Metabolic pathways of Pseudomonas fluorescens ICT in the perspective of groundwater remediation
Original language description
Insufficiency of information on the factors controlling the growth and metabolic capabilities of groundwater bacteria still limits successful implementation of enhanced bioremediation technologies. Genome of P. fluorescens ICT was analysed by 454-pyrosequencing technology. In total, 121 Mb were obtained by two sequencing runs on GS Junior System. The assembly of 454-pyrosequencing data resulted in a construction of 73 contigs with an average length of 99,068 bps. MG-RAST and Blast2Go were used for geneannotations. The predicted size of the genome was 7.2 MB. Of the total genome sequence, 97.2% were proteins annotated by MG-RAST, 91.2% of annotated features were assigned to functional categories. Tested laboratory strain was found to be closely relatedto the P. fluorescens Pf-5 (Accession No. CP000076) genome with 96% of genes with E below 10-30. Among others, the bacterium contains 18 genes involved in biphenyl metabolism, 10 involved in the metabolism of chlorinated aromatic compoun
Czech name
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Czech description
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Classification
Type
O - Miscellaneous
CEP classification
DK - Contamination and decontamination of soil including pesticides
OECD FORD branch
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Result continuities
Project
<a href="/en/project/FR-TI4%2F278" target="_blank" >FR-TI4/278: The R&D and verification of a technology applicable to remediate comprihensively contaminated soils</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2013
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů