DNA involutions and hairpin structures
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F47813059%3A19240%2F04%3A00012611" target="_blank" >RIV/47813059:19240/04:00012611 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
DNA involutions and hairpin structures
Original language description
The paper formalizes the notion of a DNA hairpin secondary structure, examining its mathematical properties. Two related secondary structures are also investigated, taking into account imperfect bonds (bulges, mismatches) and multiple hairpins. We characterize maximal sets of hairpin-forming DNA sequences, as well as hairpin-free ones. We study their algebraic properties and their computational complexity. Related polynomial-time algorithms deciding hairpin-freedom of regular sets are presented. Finally, effective methods for design of long hairpin-free DNA words are given.
Czech name
DNA involuce a vlásenkové struktury
Czech description
The paper formalizes the notion of a DNA hairpin secondary structure, examining its mathematical properties. Two related secondary structures are also investigated, taking into account imperfect bonds (bulges, mismatches) and multiple hairpins. We characterize maximal sets of hairpin-forming DNA sequences, as well as hairpin-free ones. We study their algebraic properties and their computational complexity. Related polynomial-time algorithms deciding hairpin-freedom of regular sets are presented. Finally, effective methods for design of long hairpin-free DNA words are given.
Classification
Type
D - Article in proceedings
CEP classification
IN - Informatics
OECD FORD branch
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Result continuities
Project
<a href="/en/project/GP201%2F02%2FP079" target="_blank" >GP201/02/P079: Distributed models of cognitive computing</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2004
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
Grammar Systems Week 2004
ISBN
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ISSN
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e-ISSN
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Number of pages
13
Pages from-to
188-200
Publisher name
MTA Sztaki
Place of publication
Budapešť
Event location
Budapest
Event date
Jan 1, 2004
Type of event by nationality
EUR - Evropská akce
UT code for WoS article
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