BioWes-from design of experiment, through protocol to repository, control, standardization and back-tracking

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60076658%3A12520%2F16%3A43890519" target="_blank" >RIV/60076658:12520/16:43890519 - isvavai.cz</a>

Result on the web

<a href="https://biomedical-engineering-online.biomedcentral.com/articles/10.1186/s12938-016-0188-8" target="_blank" >https://biomedical-engineering-online.biomedcentral.com/articles/10.1186/s12938-016-0188-8</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1186/s12938-016-0188-8" target="_blank" >10.1186/s12938-016-0188-8</a>

Result language

angličtina

Original language name

BioWes-from design of experiment, through protocol to repository, control, standardization and back-tracking

Original language description

Background: One of the main challenges in modern science is the amount of data produced by the experimental work; it is difficult to store, organize and share the scientific data and to extract the wealth of knowledge. Experimental method descriptions in scientific publications are often incomplete, which complicates experimental reproducibility. The proposed system was created in order to address these issues. It provides a solution for management of the experimental data and metadata to support the reproducibility. Implementation: The system is implemented as a repository for experiment descriptions and experimental data. It has three main entry points: desktop application for protocol design and data processing, web interface dedicated for protocol and data management, and web-based interface for mobile devices suitable for the field experiments. The functionality of desktop client can be extended using the custom plug-ins for data extraction and data processing. The system provides several methods to support experimental reproducibility: standardized terminology support, data and metadata at a single location, standardized protocol design or protocol evolution. Results and discussion: The system was tested in the framework of international infrastructure project AQUAEXCEL with five pilot installations at different institutes. The general testing in Tissue culture certified laboratory, Institute of complex systems and IFREMER verified the usability under different research infrastructures. The specific testing focused on the data processing modules and plug-ins demonstrated the modularity of the system for the specific conditions. The BioWes system represents experimental data as black box and therefore can handle any data type so as to provide broad usability for a variety of experiments and provide the data management infrastructure to improve the reproducibility and data sharing.

Czech name

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Czech description

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Type

J_x - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

CEP classification

IN - Informatics

OECD FORD branch

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Project

Result was created during the realization of more than one project. More information in the Projects tab.

Continuities

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach

Publication year

2016

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

Biomedical Engineering Online

ISSN

1475-925X

e-ISSN

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Volume of the periodical

15

Issue of the periodical within the volume

Supplement 1

Country of publishing house

GB - UNITED KINGDOM

Number of pages

19

Pages from-to

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UT code for WoS article

000383686300005

EID of the result in the Scopus database

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