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Next generation sequencing reveals genome downsizing in allotetraploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F11%3A00370331" target="_blank" >RIV/60077344:_____/11:00370331 - isvavai.cz</a>

  • Alternative codes found

    RIV/68081707:_____/11:00370331

  • Result on the web

    <a href="http://dx.doi.org/10.1093/molbev/msr112" target="_blank" >http://dx.doi.org/10.1093/molbev/msr112</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1093/molbev/msr112" target="_blank" >10.1093/molbev/msr112</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    Next generation sequencing reveals genome downsizing in allotetraploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs

  • Original language description

    In this work we applied next generation 454 sequencing to analyse genomes of Nicotiana tabacum (tobacco) allotetraploid and its progenitors N. sylvestris and N. tomentosiformis. Using bioinformatic similarity searches we show that the maternal N. sylvestris genome is relatively stable in the tobacco while the paternally derived N. tomentosiformis genome suffered from megased elimination of repeated DNA.

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

  • CEP classification

    BO - Biophysics

  • OECD FORD branch

Result continuities

  • Project

    <a href="/en/project/OC10037" target="_blank" >OC10037: Investigation of plant repetitive DNA by bioinformatic analysis of next-generation sequencing data</a><br>

  • Continuities

    Z - Vyzkumny zamer (s odkazem do CEZ)

Others

  • Publication year

    2011

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    Molecular Biology and Evolution

  • ISSN

    0737-4038

  • e-ISSN

  • Volume of the periodical

    28

  • Issue of the periodical within the volume

    10

  • Country of publishing house

    GB - UNITED KINGDOM

  • Number of pages

    12

  • Pages from-to

    2843-2854

  • UT code for WoS article

    000295184200013

  • EID of the result in the Scopus database