Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR.

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F22%3A00558631" target="_blank" >RIV/60077344:_____/22:00558631 - isvavai.cz</a>
Alternative codes found
RIV/60076658:12310/22:43904957
Result on the web
<a href="https://doi.org/10.1186/s40168-022-01274-3" target="_blank" >https://doi.org/10.1186/s40168-022-01274-3</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1186/s40168-022-01274-3" target="_blank" >10.1186/s40168-022-01274-3</a>

Result language
angličtina
Original language name
Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR.
Original language description
Background: The increased use of metagenomics and single-cell genomics led to the discovery of organisms from phyla with no cultivated representatives and proposed new microbial lineages such as the candidate phyla radiation (CPR or Patescibacteria). These bacteria have peculiar ribosomal structures, reduced metabolic capacities, small genome, and cell sizes, and a general host-associated lifestyle was proposed for the radiation. So far, most CPR genomes were obtained from groundwaters., however, their diversity, abundance, and role in surface freshwaters is largely unexplored. Here, we attempt to close these knowledge gaps by deep metagenomic sequencing of 119 samples of 17 different freshwater lakes located in Europe and Asia. Moreover, we applied Fluorescence in situ Hybridization followed by Catalyzed Reporter Deposition (CARD-FISH) for a first visualization of distinct CPR lineages in freshwater samples.
Czech name
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Czech description
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Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10618 - Ecology

Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year
2022
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

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