A georeferenced rRNA amplicon database of aquatic microbiomes from South America.
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F22%3A00561340" target="_blank" >RIV/60077344:_____/22:00561340 - isvavai.cz</a>
Result on the web
<a href="https://doi.org/10.1038/s41597-022-01665-z" target="_blank" >https://doi.org/10.1038/s41597-022-01665-z</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1038/s41597-022-01665-z" target="_blank" >10.1038/s41597-022-01665-z</a>
Alternative languages
Result language
angličtina
Original language name
A georeferenced rRNA amplicon database of aquatic microbiomes from South America.
Original language description
The biogeography of bacterial communities is a key topic in Microbial Ecology. Regarding continental water, most studies are carried out in the northern hemisphere, leaving a gap on microorganism's diversity patterns on a global scale. South America harbours approximately one third of the world's total freshwater resources, and is one of these understudied regions. To fill this gap, we compiled 16S rRNA amplicon sequencing data of microbial communities across South America continental water ecosystems, presenting the first database mu SudAqua[db]. The database contains over 866 georeferenced samples from 9 different ecoregions with contextual environmental information. For its integration and validation we constructed a curated database (mu SudAqua[db.sp]) using samples sequenced by Illumina MiSeq platform with commonly used prokaryote universal primers. This comprised similar to 60% of the total georeferenced samples of the mu SudAqua[db]. This compilation was carried out in the scope of the mu SudAqua collaborative network and represents one of the most complete databases of continental water microbial communities from South America.
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10606 - Microbiology
Result continuities
Project
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Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2022
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Scientific Data
ISSN
2052-4463
e-ISSN
2052-4463
Volume of the periodical
9
Issue of the periodical within the volume
1
Country of publishing house
GB - UNITED KINGDOM
Number of pages
12
Pages from-to
565
UT code for WoS article
000853336700003
EID of the result in the Scopus database
2-s2.0-85137771319