Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F24%3A00604984" target="_blank" >RIV/60077344:_____/24:00604984 - isvavai.cz</a>
Alternative codes found
RIV/60076658:12310/24:43908800 RIV/00216208:11310/24:10485273
Result on the web
<a href="https://doi.org/10.1002/cpz1.969" target="_blank" >https://doi.org/10.1002/cpz1.969</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1002/cpz1.969" target="_blank" >10.1002/cpz1.969</a>
Alternative languages
Result language
angličtina
Original language name
Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher
Original language description
PhyloFisher is a software package written primarily in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of protein sequences from eukaryotic organisms. Unlike many existing phylogenomic pipelines, PhyloFisher comes with a manually curated database of 240 protein-coding genes, a subset of a previous phylogenetic dataset sampled from 304 eukaryotic taxa. The software package can also utilize a user-created database of eukaryotic proteins, which may be more appropriate for shallow evolutionary questions. PhyloFisher is also equipped with a set of utilities to aid in running routine analyses, such as the prediction of alternative genetic codes, removal of genes and/or taxa based on occupancy/completeness of the dataset, testing for amino acid compositional heterogeneity among sequences, removal of heterotachious and/or fast-evolving sites, removal of fast-evolving taxa, supermatrix creation from randomly resampled genes, and supermatrix creation from nucleotide sequences. (c) 2024 Wiley Periodicals LLC.Basic Protocol 1: Constructing a phylogenomic datasetBasic Protocol 2: Performing phylogenomic analysesSupport Protocol 1: Installing PhyloFisherSupport Protocol 2: Creating a custom phylogenomic database
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
—
OECD FORD branch
10606 - Microbiology
Result continuities
Project
<a href="/en/project/EF16_019%2F0000759" target="_blank" >EF16_019/0000759: Centre for research of pathogenicity and virulence of parasites</a><br>
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2024
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Current Protocols
ISSN
2691-1299
e-ISSN
2691-1299
Volume of the periodical
4
Issue of the periodical within the volume
1
Country of publishing house
US - UNITED STATES
Number of pages
19
Pages from-to
e969
UT code for WoS article
001253146600018
EID of the result in the Scopus database
2-s2.0-85182842858