Genome-wide identification reveals conserved carbohydrate-active enzyme repertoire in termites
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60460709%3A41320%2F23%3A97189" target="_blank" >RIV/60460709:41320/23:97189 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.3389/ffgc.2023.1240804" target="_blank" >http://dx.doi.org/10.3389/ffgc.2023.1240804</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.3389/ffgc.2023.1240804" target="_blank" >10.3389/ffgc.2023.1240804</a>
Alternative languages
Result language
angličtina
Original language name
Genome-wide identification reveals conserved carbohydrate-active enzyme repertoire in termites
Original language description
Termites play an important role as decomposers of organic matter in forests by utilizing their gut symbionts and associated carbohydrate-active enzymes (CAZymes) to digest wood materials. However, there is a limited understanding of the entire repertoire of CAZymes and their evolution in termite genomes. Here we identified the gene families of CAZymes in publicly available termite genomes and analyzed the evolution of abundant gene families. We found that 79 CAZyme gene families from the carbohydrate-binding module and four CAZyme classes, including glycosyl transferase (GT), glycoside hydrolase (GH), auxiliary activity (AA) and carbohydrate esterase (CE), were present in termites with minor variations across termite species except for a few gene families. The gene trees of the large and conserved gene families have several groups of genes from all species, and each group encodes enzymes with complete corresponding domains. Three gene families, namely GT1, GH1 and AA3, exhibited significant variations in gene numbers and experienced several losses and a few duplications, which might be related to their rich gut symbionts and newly gained functions. Furthermore, the overall expression of CAZymes appears to have a caste- and tissue-specific pattern, reflecting a division of labor in termite colonies. Overall, these results reveal a likely stable CAZyme repertoire in termites and pave the way for further research on the functional contribution of termites to wood digestion.
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10618 - Ecology
Result continuities
Project
<a href="/en/project/EF16_019%2F0000803" target="_blank" >EF16_019/0000803: Advanced research supporting the forestry and wood-processing sector´s adaptation to global change and the 4th industrial revolution</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2023
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
FRONTIERS IN FORESTS AND GLOBAL CHANGE
ISSN
2624-893X
e-ISSN
2624-893X
Volume of the periodical
6
Issue of the periodical within the volume
2023
Country of publishing house
CH - SWITZERLAND
Number of pages
13
Pages from-to
1-13
UT code for WoS article
001100214100001
EID of the result in the Scopus database
2-s2.0-85176439730