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Chromosome-Scale Genome Assembly of the Hexaploid Taiwanese Goosefoot “Djulis” (Chenopodium formosanum).

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60460709%3A41330%2F22%3A91661" target="_blank" >RIV/60460709:41330/22:91661 - isvavai.cz</a>

  • Result on the web

    <a href="https://academic.oup.com/gbe/article/14/8/evac120/6650271?login=true" target="_blank" >https://academic.oup.com/gbe/article/14/8/evac120/6650271?login=true</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1093/gbe/evac120" target="_blank" >10.1093/gbe/evac120</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    Chromosome-Scale Genome Assembly of the Hexaploid Taiwanese Goosefoot “Djulis” (Chenopodium formosanum).

  • Original language description

    Djulis (Chenopodium formosanum Koidz.) is a crop grown since antiquity in Taiwan. It is a BCD-genome hexaploid (2n = 6x = 54) domesticated form of lambsquarters (C. album L.) and a relative of the allotetraploid (AABB) C. quinoa. As with quinoa, djulis seed contains a complete protein profile and many nutritionally important vitamins and minerals. While still sold locally in Taiwanese markets, its traditional culinary uses are being lost as diets of younger generations change. Moreover, indigenous Taiwanese peoples who have long safeguarded djulis are losing their traditional farmlands. We used PacBio sequencing and Hi-C-based scaffolding to produce a chromosome-scale, reference-quality assembly of djulis. The final genome assembly spans 1,63 Gb in 798 scaffolds, with 97,8% of the sequence contained in 27 scaffolds representing the nine haploid chromosomes of each sub-genome of the species. Benchmarking of universal, single-copy orthologs indicated that 98,5% of the conserved orthologous genes for Vi

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database

  • CEP classification

  • OECD FORD branch

    10611 - Plant sciences, botany

Result continuities

  • Project

  • Continuities

    S - Specificky vyzkum na vysokych skolach

Others

  • Publication year

    2022

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    Genome Biology and Evolution

  • ISSN

    1759-6653

  • e-ISSN

    1759-6653

  • Volume of the periodical

    14

  • Issue of the periodical within the volume

    8

  • Country of publishing house

    CZ - CZECH REPUBLIC

  • Number of pages

    7

  • Pages from-to

    1-7

  • UT code for WoS article

    000836845900001

  • EID of the result in the Scopus database

    2-s2.0-85135598546