Metagenomic evidence for the presence of phototrophic Gemmatimonadetes bacteria in diverse environments
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61388971%3A_____%2F16%3A00463649" target="_blank" >RIV/61388971:_____/16:00463649 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1111/1758-2229.12363" target="_blank" >http://dx.doi.org/10.1111/1758-2229.12363</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1111/1758-2229.12363" target="_blank" >10.1111/1758-2229.12363</a>
Alternative languages
Result language
angličtina
Original language name
Metagenomic evidence for the presence of phototrophic Gemmatimonadetes bacteria in diverse environments
Original language description
Gemmatimonadetes represents a poorly understood bacterial phylum with only a handful of cultured species. Recently, one of its few representatives, Gemmatimonas phototrophica, was found to contain purple bacterial photosynthetic reaction centres. However, almost nothing is known about the environmental distribution of phototrophic Gemmatimonadetes bacteria. To fill this gap, we took advantage of fast-growing public metagenomic databases and performed an extensive survey of metagenomes deposited into the NCBI's WGS database, the JGI's IMG webserver and the MG-RAST webserver. By employing Mg protoporphyrin IX monomethyl ester oxidative cyclase (AcsF) as a marker gene, we identified 291 AcsF fragments (24-361 amino acids long) that are closely related to G.phototrophica from 161 metagenomes originating from various habitats, including air, river waters/sediment, estuarine waters, lake waters, biofilms, plant surfaces, intertidal sediment, soils, springs and wastewater treatment plants, but none from marine waters or sediment.
Czech name
—
Czech description
—
Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
EE - Microbiology, virology
OECD FORD branch
—
Result continuities
Project
<a href="/en/project/LO1416" target="_blank" >LO1416: Algatech plus</a><br>
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2016
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Environmental Microbiology Reports
ISSN
1758-2229
e-ISSN
—
Volume of the periodical
8
Issue of the periodical within the volume
1
Country of publishing house
GB - UNITED KINGDOM
Number of pages
11
Pages from-to
139-149
UT code for WoS article
000371481100018
EID of the result in the Scopus database
2-s2.0-84958912741