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Metagenomic evidence for the presence of phototrophic Gemmatimonadetes bacteria in diverse environments

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61388971%3A_____%2F16%3A00463649" target="_blank" >RIV/61388971:_____/16:00463649 - isvavai.cz</a>

  • Result on the web

    <a href="http://dx.doi.org/10.1111/1758-2229.12363" target="_blank" >http://dx.doi.org/10.1111/1758-2229.12363</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1111/1758-2229.12363" target="_blank" >10.1111/1758-2229.12363</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    Metagenomic evidence for the presence of phototrophic Gemmatimonadetes bacteria in diverse environments

  • Original language description

    Gemmatimonadetes represents a poorly understood bacterial phylum with only a handful of cultured species. Recently, one of its few representatives, Gemmatimonas phototrophica, was found to contain purple bacterial photosynthetic reaction centres. However, almost nothing is known about the environmental distribution of phototrophic Gemmatimonadetes bacteria. To fill this gap, we took advantage of fast-growing public metagenomic databases and performed an extensive survey of metagenomes deposited into the NCBI's WGS database, the JGI's IMG webserver and the MG-RAST webserver. By employing Mg protoporphyrin IX monomethyl ester oxidative cyclase (AcsF) as a marker gene, we identified 291 AcsF fragments (24-361 amino acids long) that are closely related to G.phototrophica from 161 metagenomes originating from various habitats, including air, river waters/sediment, estuarine waters, lake waters, biofilms, plant surfaces, intertidal sediment, soils, springs and wastewater treatment plants, but none from marine waters or sediment.

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

  • CEP classification

    EE - Microbiology, virology

  • OECD FORD branch

Result continuities

  • Project

    <a href="/en/project/LO1416" target="_blank" >LO1416: Algatech plus</a><br>

  • Continuities

    I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Others

  • Publication year

    2016

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    Environmental Microbiology Reports

  • ISSN

    1758-2229

  • e-ISSN

  • Volume of the periodical

    8

  • Issue of the periodical within the volume

    1

  • Country of publishing house

    GB - UNITED KINGDOM

  • Number of pages

    11

  • Pages from-to

    139-149

  • UT code for WoS article

    000371481100018

  • EID of the result in the Scopus database

    2-s2.0-84958912741