A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61389030%3A_____%2F11%3A00369945" target="_blank" >RIV/61389030:_____/11:00369945 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1007/s10142-011-0240-5" target="_blank" >http://dx.doi.org/10.1007/s10142-011-0240-5</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1007/s10142-011-0240-5" target="_blank" >10.1007/s10142-011-0240-5</a>
Alternative languages
Result language
angličtina
Original language name
A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome
Original language description
Powdery mildew of wheat (Triticum aestivum L.) is caused by the ascomycete fungus Blumeria graminis f.sp. tritici. Genomic approaches open new ways to study the biology of this obligate biotrophic pathogen. We started the analysis of the Bg tritici genome with the low-pass sequencing of its genome using the 454 technology and the construction of the first genomic bacterial artificial chromosome (BAC) library for this fungus. High-coverage contigs were assembled with the 454 reads. They allowed the characterization of 56 transposable elements and the establishment of the Blumeria repeat database. The BAC library contains 12,288 clones with an average insert size of 115 kb, which represents a maximum of 7.5-fold genome coverage. Sequencing of the BAC ends generated 12.6 Mb of random sequence representative of the genome. Analysis of BAC-end sequences revealed a massive invasion of transposable elements accounting for at least 85% of the genome.
Czech name
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Czech description
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Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
EB - Genetics and molecular biology
OECD FORD branch
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Result continuities
Project
<a href="/en/project/ED0007%2F01%2F01" target="_blank" >ED0007/01/01: Centre of the Region Haná for Biotechnological and Agricultural Research</a><br>
Continuities
Z - Vyzkumny zamer (s odkazem do CEZ)
Others
Publication year
2011
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
FUNCTIONAL & INTEGRATIVE GENOMICS
ISSN
1438-793X
e-ISSN
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Volume of the periodical
11
Issue of the periodical within the volume
4
Country of publishing house
DE - GERMANY
Number of pages
7
Pages from-to
671-677
UT code for WoS article
000300093500014
EID of the result in the Scopus database
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