SNP analysis of Ukrainian maize inbreds with alternative state of molecular carotenogenesis marker crtRB1-3’TE

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61389030%3A_____%2F24%3A00600459" target="_blank" >RIV/61389030:_____/24:00600459 - isvavai.cz</a>

Result on the web

<a href="https://doi.org/10.15407/agrisp11.01.077" target="_blank" >https://doi.org/10.15407/agrisp11.01.077</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.15407/agrisp11.01.077" target="_blank" >10.15407/agrisp11.01.077</a>

Result language

angličtina

Original language name

SNP analysis of Ukrainian maize inbreds with alternative state of molecular carotenogenesis marker crtRB1-3’TE

Original language description

SNP analysis and estimation of genetic relations in maize inbreds with the alternative state of beta-carotene hydroxylase 1 gene (crtRB1) by the molecular marker crtRB1-3'TE. Methods. SNP analysis, statistical methods. BDIIII panel with 384 SNP markers was used for comparative research of 35 maize inbreds developed and adopted in the northern Steppe of Ukraine. Results. SNP analysis of investigated inbred set showed that the part of dimorphic markers was 98.2 %, the average minor allele frequency (MAF) was 0.3040, the average polymorphism information content (PIC) was 0.3064, and the average shift of genetic diversity of markers was 0.3898. There was no significant difference between genetic SNP distances within both groups of inbreds with favourable/unfavourable alleles and between these groups by crtRB1-3'TE. The SNP distances were used to build a dendrogram of genetic relations between maize inbreds with an alternative state of the crtRB1-3'TE marker. Conclusions. The relationship between the allelic state of the beta-carotene hydroxylase 1 gene and single nucleotide polymorphism markers for maize inbreds is presented. The alleles of SNP markers BDI-III-130A, BDI-III-15A, BDI-III-60C, BDI-III-61C, BDI-III-116G, BDIIII-128A, and BDI-III-129. were found to be most frequent in the inbreds, which are carriers of the favourable allele of 543 bp of crtRB1 gene by the crtRB1-3'TE marker. The random distribution of alleles of this gene among maize inbreds developed in the northern Steppe of Ukraine was demonstrated.

Czech name

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Czech description

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Type

J_imp - Article in a specialist periodical, which is included in the Web of Science database

CEP classification

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OECD FORD branch

10608 - Biochemistry and molecular biology

Project

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Continuities

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year

2024

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

Agricultural Science and Practice

ISSN

2312-3370

e-ISSN

2312-3389

Volume of the periodical

11

Issue of the periodical within the volume

1

Country of publishing house

UA - UKRAINE

Number of pages

9

Pages from-to

77-85

UT code for WoS article

001250793600007

EID of the result in the Scopus database

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