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Newly designed 11-gene panel reveals first case of hereditary amyloidosis captured by massive parallel sequencing

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61988987%3A17110%2F18%3AA1901W56" target="_blank" >RIV/61988987:17110/18:A1901W56 - isvavai.cz</a>

  • Alternative codes found

    RIV/61989592:15110/18:73588054 RIV/00843989:_____/18:E0107154 RIV/00216224:14310/18:00111930

  • Result on the web

    <a href="http://dx.doi.org/10.1136/jclinpath-2017-204978" target="_blank" >http://dx.doi.org/10.1136/jclinpath-2017-204978</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1136/jclinpath-2017-204978" target="_blank" >10.1136/jclinpath-2017-204978</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    Newly designed 11-gene panel reveals first case of hereditary amyloidosis captured by massive parallel sequencing

  • Original language description

    Aims Amyloidosis is caused by deposition of abnormal protein fibrils, leading to damage of organ function. Hereditary amyloidosis represents a monogenic disease caused by germline mutations in 11 amyloidogenic precursor protein genes. One of the important but non-specific symptoms of amyloidosis is hypertrophic cardiomyopathy. Diagnostics of hereditary amyloidosis is complicated and the real cause can remain overlooked. We aimed to design hereditary amyloidosis gene panel and to introduce new next-generation sequencing (NGS) approach to investigate hereditary amyloidosis in a cohort of patients with hypertrophic cardiomyopathy of unknown significance.Methods Design of target enrichment DNA library preparation using Haloplex Custom Kit containing 11 amyloidogenic genes was followed by MiSeq Illumina sequencing and bioinformatics identification of germline variants using tool VarScan in a cohort of 40 patients.Results We present design of NGS panel for 11 genes (TTR, FGA, APOA1, APOA2, LYZ, GSN, CST3, PRNP, APP, 82M, ITM28) connected to various forms of amyloidosis. We detected one mutation, which is responsible for hereditary amyloidosis. Some other single nucleotide variants are so far undescribed or rare variants or represent common polymorphisms in European population.Conclusions We report one positive case of hereditary amyloidosis in a cohort of patients with hypertrophic cardiomyopathy of unknown significance and set up first panel for NGS in hereditary amyloidosis. This work may facilitate successful implementation of the NGS method by other researchers or clinicians and may improve the diagnostic process after validation

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database

  • CEP classification

  • OECD FORD branch

    30109 - Pathology

Result continuities

  • Project

    Result was created during the realization of more than one project. More information in the Projects tab.

  • Continuities

    P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach

Others

  • Publication year

    2018

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    JOURNAL OF CLINICAL PATHOLOGY

  • ISSN

    0021-9746

  • e-ISSN

    1472-4146

  • Volume of the periodical

    71

  • Issue of the periodical within the volume

    8

  • Country of publishing house

    GB - UNITED KINGDOM

  • Number of pages

    8

  • Pages from-to

    687-694

  • UT code for WoS article

    000442467400005

  • EID of the result in the Scopus database

    2-s2.0-85049215036