BIOSPEAN: A freeware tool for processing spectra from MALDI intact cell/spore mass spectrometry
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61989592%3A15310%2F13%3A33147919" target="_blank" >RIV/61989592:15310/13:33147919 - isvavai.cz</a>
Result on the web
<a href="http://software.cr-hana.upol.cz/" target="_blank" >http://software.cr-hana.upol.cz/</a>
DOI - Digital Object Identifier
—
Alternative languages
Result language
angličtina
Original language name
BIOSPEAN: A freeware tool for processing spectra from MALDI intact cell/spore mass spectrometry
Original language description
The software BIOSPEAN is applicable for processing of peptide/protein profiles obtained from MALDI intact cell/spore mass spectrometry. It has been developed as a web application using common technology. The BIOSPEAN automatically finds peaks in a mass spectrum. The peak detection principle involves a local scanning of intensity values around individual m/z positions. To cope with the level of noise, a threshold signal-to-noise ratio is adjusted for filtering relevant results. Based on the detected peakpattern, a similarity search in a custom spectral database can subsequently be performed for sample identification. When a spectrum is analyzed by comparison with a database entry, a percentage score value is calculated from the number of identical peakpositions found (they are assigned with an adjustable mass tolerance) divided by the number of all detected peaks in the analyzed spectrum. Each two spectra may also be compared in the opposite way and both score values averaged. The dat
Czech name
—
Czech description
—
Classification
Type
R - Software
CEP classification
CE - Biochemistry
OECD FORD branch
—
Result continuities
Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2013
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Internal product ID
BIOSPEAN
Technical parameters
program uveřejněn v článku Raus M., Šebela M. Journal of Proteomics Bioinformatics, 12, 283-287, 2014.
Economical parameters
jde o freeware, program pro výzkumné účely, autorská práva má Dr. Martin Raus
Owner IČO
61989592
Owner name
Univerzita Palackého