Building the Coleoptera tree-of-life for } 8000 species: composition of public DNA data and fit with Linnaean classification

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61989592%3A15310%2F14%3A33152041" target="_blank" >RIV/61989592:15310/14:33152041 - isvavai.cz</a>
Result on the web
<a href="http://onlinelibrary.wiley.com/doi/10.1111/syen.12037/epdf" target="_blank" >http://onlinelibrary.wiley.com/doi/10.1111/syen.12037/epdf</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1111/syen.12037" target="_blank" >10.1111/syen.12037</a>

Result language
angličtina
Original language name
Building the Coleoptera tree-of-life for } 8000 species: composition of public DNA data and fit with Linnaean classification
Original language description
The species representation of public databases is growing rapidly and permits increasingly detailed phylogenetic inferences. We present a supermatrix based on all gene sequences of Coleoptera available in Genbank for two nuclear (18S and 28S rRNA) and two mitochondrial (rrnL and cox1) genes. After filtering for unique species names and the addition of 2000 unpublished sequences for cox1 and 18S rRNA, the resulting data matrix included 8441 species-level terminals and 6600 aligned nucleotide positions. The concatenated matrix represents the equivalent of 2.17% of the 390000 described species of Coleoptera and includes 152 beetle families. The remaining 29 families constitute small lineages with 250 known species in total. Taxonomic coverage remains lowfor several major lineages, including Buprestidae (0.16% of described species), Staphylinidae (1.03%), Tenebrionidae (0.90%) and Cerambycidae (0.58%). The current taxon sampling was strongly biased towards the Northern Hemisphere. Phyloge
Czech name
—
Czech description
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Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
EG - Zoology
OECD FORD branch
—

Project
<a href="/en/project/GAP506%2F11%2F1757" target="_blank" >GAP506/11/1757: Fylogeneze skupiny Metriorrhynchini: historie kolonizace, radiace a vymíraní</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year
2014
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

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