Box counting method in recording, processing and evaluation of genomic signals

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F62156489%3A43210%2F10%3A00184582" target="_blank" >RIV/62156489:43210/10:00184582 - isvavai.cz</a>

Result on the web

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DOI - Digital Object Identifier

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Result language

angličtina

Original language name

Box counting method in recording, processing and evaluation of genomic signals

Original language description

Fractals are geometrical shapes with non integer dimension and invariance against change of scale factor. For each geometrical shape, a single parameter - dimension - can be calculated. For calculation, Box Counting Method (BCM) was chosen. Determinationof dimension on one level of resolution is not sufficient, it is necessary to subsequently process it and determine multifractal coefficient. Aim of our interest consists in analysis of images obtained from a linear sequence of DNA code. For analysis itself, sequences of Homo sapiens and Citrobacter youngae were chosen. Results of calculation are fractal coefficients derived from dimensions of generated structures. This result enables to introduce criterion for sequences determination. Graphical outputs may be also represented as multidimensional alternative transformation of linearly recorded genomic signal. Algorithms were developed in computational environment MATLAB. Data were downloaded from a public database EMBL (ESI) and GenBan

Czech name

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Czech description

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Type

J_x - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

CEP classification

CB - Analytical chemistry, separation

OECD FORD branch

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Project

Result was created during the realization of more than one project. More information in the Projects tab.

Continuities

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year

2010

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

Journal of Biochemical Technology

ISSN

0974-2328

e-ISSN

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Volume of the periodical

2

Issue of the periodical within the volume

5

Country of publishing house

IN - INDIA

Number of pages

3

Pages from-to

91-93

UT code for WoS article

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EID of the result in the Scopus database

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