Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F67985904%3A_____%2F14%3A00432592" target="_blank" >RIV/67985904:_____/14:00432592 - isvavai.cz</a>

Result on the web

<a href="http://dx.doi.org/10.1093/database/bau061" target="_blank" >http://dx.doi.org/10.1093/database/bau061</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1093/database/bau061" target="_blank" >10.1093/database/bau061</a>

Result language

angličtina

Original language name

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

Original language description

DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has never been greater. Furthermore, the growing number of molecular ecology and microbiome projects using high-throughput sequencing require fast and effective methods for en masse species assignments. In this article, we focus on selecting and re-annotating aset of marker reference sequences that represent each currently accepted order of Fungi. The particular focus is on sequences from the internal transcribed spacer region in the nuclear ribosomal cistron, derived from type specimens and/or ex-type cultures. Re-annotated and verified sequences were deposited in a curated public database at the National Center for Biotechnology Information (NCBI), namely the RefSeq Targeted Loci (RTL) database, and will be visible during routine sequence s

Czech name

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Czech description

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Type

J_x - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

CEP classification

EE - Microbiology, virology

OECD FORD branch

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Project

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Continuities

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year

2014

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

Database

ISSN

1758-0463

e-ISSN

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Volume of the periodical

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Issue of the periodical within the volume

bau061

Country of publishing house

GB - UNITED KINGDOM

Number of pages

21

Pages from-to

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UT code for WoS article

000338579600001

EID of the result in the Scopus database

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