An empirical assessment of a single family-wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F67985939%3A_____%2F19%3A00510353" target="_blank" >RIV/67985939:_____/19:00510353 - isvavai.cz</a>
Alternative codes found
RIV/00216208:11310/19:10407340
Result on the web
<a href="http://hdl.handle.net/11104/0302385" target="_blank" >http://hdl.handle.net/11104/0302385</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1002/aps3.11295" target="_blank" >10.1002/aps3.11295</a>
Alternative languages
Result language
angličtina
Original language name
An empirical assessment of a single family-wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae
Original language description
Hybrid capture with high-throughput sequencing (Hyb-Seq) is a powerful tool for evolutionary studies. The applicability of an Asteraceae family-specific Hyb-Seq probe set and the outcomes of different phylogenetic analyses are investigated here. Hyb-Seq data from 112 Asteraceae samples were organized into groups at different taxonomic levels (tribe, genus, and species). For each group, data sets of non-paralogous loci were built and proportions of parsimony informative characters estimated. The impacts of analyzing alternative data sets, removing long branches, and type of analysis on tree resolution and inferred topologies were investigated in tribe Cichorieae. Alignments of the Asteraceae family-wide Hyb-Seq locus set were parsimony informative at all taxonomic levels. Levels of resolution and topologies inferred at shallower nodes differed depending on the locus data set and the type of analysis, and were affected by the presence of long branches. The approach used to build a Hyb-Seq locus data set influenced resolution and topologies inferred in phylogenetic analyses. Removal of long branches improved the reliability of topological inferences in maximum likelihood analyses. The Astereaceae Hyb-Seq probe set is applicable at multiple taxonomic depths, which demonstrates that probe sets do not necessarily need to be lineage-specific.
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10611 - Plant sciences, botany
Result continuities
Project
<a href="/en/project/GJ16-15134Y" target="_blank" >GJ16-15134Y: Old wine in new skin: the role of polyploidization and hybridization in an adaptively-radiated plant group using high-throughput sequencing methods</a><br>
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2019
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Applications in Plant Sciences
ISSN
2168-0450
e-ISSN
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Volume of the periodical
7
Issue of the periodical within the volume
10
Country of publishing house
US - UNITED STATES
Number of pages
27
Pages from-to
1-27
UT code for WoS article
000493059500001
EID of the result in the Scopus database
2-s2.0-85074167898