TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F68081707%3A_____%2F20%3A00539921" target="_blank" >RIV/68081707:_____/20:00539921 - isvavai.cz</a>
Alternative codes found
RIV/00216224:14330/20:00118965
Result on the web
<a href="https://academic.oup.com/bioinformatics/article/36/20/4991/5871348" target="_blank" >https://academic.oup.com/bioinformatics/article/36/20/4991/5871348</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1093/bioinformatics/btaa632" target="_blank" >10.1093/bioinformatics/btaa632</a>

Result language
angličtina
Original language name
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting
Original language description
Motivation: Transposable elements (TEs) in eukaryotes often get inserted into one another, forming sequences that become a complex mixture of full-length elements and their fragments. The reconstruction of full-length elements and the order in which they have been inserted is important for genome and transposon evolution studies. However, the accumulation of mutations and genome rearrangements over evolutionary time makes this process error-prone and decreases the efficiency of software aiming to recover all nested full-length TEs.
Czech name
—
Czech description
—

Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
—
OECD FORD branch
10609 - Biochemical research methods

Project
<a href="/en/project/GA18-00258S" target="_blank" >GA18-00258S: The role of transposable elements in the dynamics of plant genomes</a><br>
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year
2020
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

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