The structure and dynamics of chitin nanofibrils in an aqueous environment revealed by molecular dynamics simulations

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F68081723%3A_____%2F16%3A00464393" target="_blank" >RIV/68081723:_____/16:00464393 - isvavai.cz</a>

Alternative codes found

RIV/00216224:14740/16:00090502

Result on the web

<a href="http://dx.doi.org/10.1039/c6ra00107f" target="_blank" >http://dx.doi.org/10.1039/c6ra00107f</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1039/c6ra00107f" target="_blank" >10.1039/c6ra00107f</a>

Result language

angličtina

Original language name

The structure and dynamics of chitin nanofibrils in an aqueous environment revealed by molecular dynamics simulations

Original language description

Chitin is one of the most abundant structural biomolecules in nature, where it occurs in the form of nanofibrils that are the smallest building blocks for many biological structural materials, such as the exoskeleton of Arthropoda. Despite this fact, little is known about the structural properties of these nanofibrils. Here, we present a theoretical study of a single chitin molecule and 10 alpha-chitin nanofibrils with different numbers of chains in an aqueous environment that mimics the conditions in natural systems during self-assembly. Our extensive analysis of the molecular dynamics trajectories, including free energy calculations for every model system, reveals not only the structural properties of the nanofibrils, but also provides insight into the principles of nanofibril formation. We identified the fundamental phenomena occurring in the chitin nanofibrils such as their hydrogen bonding pattern and resulting helical shape. With increasing size, the nanofibrils become increasingly stable and their structural properties approach those of crystalline alpha-chitin if they consist of more than 20 chains. Interestingly, this coincides with the typical size of chitin nanofibrils observed in natural systems, suggesting that their evolutionary success was at least partially driven by these specific structure-property relations

Czech name

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Czech description

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Type

J_x - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

CEP classification

BO - Biophysics

OECD FORD branch

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Project

Result was created during the realization of more than one project. More information in the Projects tab.

Continuities

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year

2016

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

RSC Advances

ISSN

2046-2069

e-ISSN

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Volume of the periodical

6

Issue of the periodical within the volume

36

Country of publishing house

GB - UNITED KINGDOM

Number of pages

22

Pages from-to

30710-30721

UT code for WoS article

000373061600093

EID of the result in the Scopus database

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