Atlas of Protein Hydration
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F86652036%3A_____%2F14%3A00452202" target="_blank" >RIV/86652036:_____/14:00452202 - isvavai.cz</a>
Result on the web
<a href="http://www.dnatco.org/atlas" target="_blank" >http://www.dnatco.org/atlas</a>
DOI - Digital Object Identifier
—
Alternative languages
Result language
angličtina
Original language name
Atlas of Protein Hydration
Original language description
The website provides information on the hydration of amino acid residues in different conformational states in X-ray crystal structures and their visualization in a Jmol applet. The positions and probabilities of the hydration sites were derived from theanalysis of of a non-redundant set of 2818 high resolution protein crystal structures from the Protein Data Bank, as described in Biedermannova et al, Acta Cryst. D 2015. For each hydration site the interaction energy was also calculated at the level ofDFT-D (RI-TPSS/TZVP augmented with empirical dispersion term) with the solvation effects described using COSMO.
Czech name
—
Czech description
—
Classification
Type
R - Software
CEP classification
BO - Biophysics
OECD FORD branch
—
Result continuities
Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2014
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Internal product ID
webatlas_hydratace
Technical parameters
website, html, css, javascript, JSmol applet
Economical parameters
typový projekt
Owner IČO
86652036
Owner name
Biotechnologický ústav AV ČR, v. v. i.