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Template-based prediction of RNA tertiary structure using its predicted secondary structure
We present improved methodology for prediction of medium and large sized RNA three dimensional structures, based on comparative modeling approach. Method is enriched by the prediction of secondary structure, which is then u...
Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
- 2017 •
- D •
- Link
Rok uplatnění
D - Stať ve sborníku
Výsledek na webu
SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity Algorithm
The recent interest in function of various RNA structures, reflected in the growth of solved RNA structures in PDB, calls for methods for effective and efficient similarity search in RNA structural
IN - Informatika
- 2011 •
- Jx •
- Link
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Výsledek na webu
MultiSETTER: web server for multiple RNA structure comparison
requires methods for comparing and analyzing their tertiary and quaternary structures. While structural superposition of short RNAs is achievable in a reasonable time a fast and accurate algorithm for RNA...
IN - Informatika
- 2015 •
- Jx •
- Link
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Výsledek na webu
Template-based prediction of RNA tertiary structure
RNA tertiary structure prediction approaches can be divided into two groups: de structure prediction field, there exist only very few tools for template-based RNA structure prediction. Therefore, ...
EE - Mikrobiologie, virologie
- 2016 •
- D
Rok uplatnění
D - Stať ve sborníku
Efficient RNA pairwise structure comparison by SETTER method
alignment of short RNAs is achievable in a reasonable amount of time, large structures. Results: In this article a novel algorithm for an RNA structural comparison SETTER (SEcondary sTructure-based TE...
IN - Informatika
- 2012 •
- Jx •
- Link
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Výsledek na webu
SETTER: web server for RNA structure comparison
structures.While structural alignment of short RNAs is achievable in a reasonable amount web server for the RNA structure pairwise comparison utilizing the SETTER (SEcondary sTructure-based TERtiary
IN - Informatika
- 2012 •
- Jx •
- Link
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Výsledek na webu
Leading RNA tertiary interactions: Structures, energies, and water insertion of a-minor and P-interactions. A quantum chemical view
The intrinsic structure and stability of the P-motif and the four basic types of A-minor interactions (types I, II, III, and 0) were characterized by QM and MD. These interactions represent the most prominent RNA tertiary i...
BO - Biofyzika
- 2007 •
- Jx
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
MultiSETTER - Multiple RNA Structure Similarity Algorithm
Recent advances in RNA research and a steady growth of available RNA structures call for bioinformatics methods for handling RNA structural data. Recently, we have introduced SETTER - a fast and accurate m...
IN - Informatika
- 2013 •
- D •
- Link
Rok uplatnění
D - Stať ve sborníku
Výsledek na webu
Multiple 3D RNA Structure Superposition Using Neighbor Joining
structures call for bioinformatics methods for handling and analyzing RNA structural data. Recently, we introduced SETTER-a fast and accurate method for RNA pairwise structure structure alignment...
IN - Informatika
- 2015 •
- Jx •
- Link
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Výsledek na webu
SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity Algorithm
The recent interest in function of various RNA structures, reflected in the growth of solved RNA structures in PDB, calls for methods for effective and efficient similarity search in RNA structural
IN - Informatika
- 2011 •
- D •
- Link
Rok uplatnění
D - Stať ve sborníku
Výsledek na webu
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