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Computational screening of biologically active compounds
. Structure-based virtual screening requires the knowledge of 3D structure of target protein. A typical structure-based method is the so called docking that tries that complement targets...
Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
- 2019 •
- C
Rok uplatnění
C - Kapitola v odborné knize
Success of AlphaFold project in protein 3D structure prediction
The article summarizes the principle of AlphaFold program for prediction of protein 3D structure and possible future challenges in the field....
Biochemistry and molecular biology
- 2022 •
- Jost •
- Link
Rok uplatnění
Jost - Ostatní články v recenzovaných periodicích
Výsledek na webu
Protein Synthesis Elongation Factor Tu Present in Spores of Streptomyces coelicolor Can Be Phosphorylated in Vitro by the Spore Protein Kinase
We observed EF-Tu phosphorylation on both, intrinsic S. coelicolor factor and externally added purified EF-Tu from Streptomyces aureofaciens, on two isoforms. Putative serine and threonine residues as potential phosphorylation targets were d...
EE - Mikrobiologie, virologie
- 2007 •
- Jx
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Automated shape-based clustering of 3D immunoglobulin protein structures in chronic lymphocytic leukemia
a novel method for clustering a set of proteins based on their 3D structure focusing on 3D structures of BcR IG from a large series of patients with CLL. The method antigen involvement in disease ontogeny...
Biochemistry and molecular biology
- 2018 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
PDBsum: Structural summaries of PDB entries
PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, protein-ligand and
Biological sciences
- 2018 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
Homology modeling in the time of collective and artificial intelligence
Homology modeling is a method for building protein 3D structures using protein-chains are added. Once the low-homology loops are modeled, the whole 3D structure. Critical Assessment of protein...
Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
- 2020 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
Quality Management for Big 3D Data Analytics: A Case Study of Protein Data Bank
data is the protein data, which can be used to visualize the protein structure study includes a comprehensive taxonomy of data quality problems for the 3D protein of their 3D protein dat...
Computer and information sciences
- 2019 •
- D •
- Link
Rok uplatnění
D - Stať ve sborníku
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Ligand-Based Pharmacophore Modeling Using Novel 3D Pharmacophore Signatures
. Since not all protein targets have available 3D structures, ligand-based approaches. The approach searches for 3D pharmacophore models starting from 2D structures of available for alignment. We ...
Biochemistry and molecular biology
- 2018 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
AlphaFind: Discover structure similarity across the entire known proteome
, the application provides 3D visualizations of protein structure superpositions in order retrieval in the entire set of AlphaFold DB structures. Unlike other protein processing the main 3D featur...
Computer and information sciences
- 2024 •
- Vsouhrn •
- Link
Rok uplatnění
Vsouhrn - Souhrnná výzkumná zpráva
Výsledek na webu
AlphaFind: discover structure similarity across the proteome in AlphaFold DB
functionality, the application provides 3D visualizations of protein structure retrieval in the entire set of AlphaFold DB structures. Unlike other protein processing the main 3D features of each...
Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
- 2024 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
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