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Supervised inference of gene-regulatory networks
Inference of protein interaction networks from various sources of data has become an important topic of both systems and computational biology. Here we present a supervised approach to identification of gene expression regu...
IN - Informatika
- 2008 •
- Jx
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
On Tower and Checkerboard Neural Network Architectures for Gene Expression Inference
landmark genes and uses a computational method to infer the expression of another ~10,000 genes. One such method for the gene expression inference is a D-GEX which that significantly improve the quality o...
Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
- 2020 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
A nitty-gritty aspect of correlation and network inference from gene expression data
We give a model of correlation dependency for gene expression data...
BB - Aplikovaná statistika, operační výzkum
- 2008 •
- Jx
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Inference of active transcriptional networks by integration of gene expression kinetics modeling and multisource data
Inference of active regulatory networks in yeast was done by integration of kinetic modeling using microarray experiments and dat from CHIP-on-chip experiments. The data were used to analyze yeast cell cycle......
EE - Mikrobiologie, virologie
- 2009 •
- Jx
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Genexpi: a toolset for identifying regulons and validating gene regulatory networks using time-course expression data
network inference. Integrating multiple sources of data is essential for correct identification of regulons and complete gene regulatory networks. Time series of expression-course gene expression data. Wh...
Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
- 2018 •
- O
Rok uplatnění
O - Ostatní výsledky
Technique of gene regulatory networks reconstruction based on ARACNE inference algorithm
The paper presents the technique of gene regulatory networks reconstruction based on ARACNE (Algorithm for the Reconstruction of Accurate Cellular Networks) inference algorithm. The research concerning optimisation...
Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
- 2019 •
- D
Rok uplatnění
D - Stať ve sborníku
An empirical comparison of popular structure learning algorithms with a view to gene network inference
In this work, we study the performance of different structure learning algorithms in the context of inferring gene networks from transcription data. We consider representatives of different structure learning approaches, so...
Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
- 2017 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
On Transformative Adaptive Activation Functions in Neural Networks for Gene Expression Inference
Gene expression profiling was made more cost-effective by the NIH LINCS program that profiles only ~1, 000 selected landmark genes and uses them to reconstruct the whole profile. The D–GEX method employs neural networks to ...
Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
- 2021 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
Global systematic mutagenesis and-omics for inference of genetic networks.
Knowledge of whole genomesequence together with the progress in large scale gene expression monitoring techniques.
EE - Mikrobiologie, virologie
- 2003 •
- D
Rok uplatnění
D - Stať ve sborníku
Dynamic network-based epistasis analysis: Boolean examples
In this article we focus on how the hierarchical and single-path assumptions of epistasis analysis can bias the inference of gene regulatory networks. Here we emphasize network models. Epistasis in a broad sense re...
EB - Genetika a molekulární biologie
- 2011 •
- Jx •
- Link
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Výsledek na webu
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