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On a confidence of the phylogenetic trees
On a confidence of the phylogenetic trees...
BA - Obecná matematika
- 2002 •
- D
Rok uplatnění
D - Stať ve sborníku
A plant biologists' guide to phylogenetic analysis of biological macromolecule sequences
phylogenetic trees remains a process involving several critical steps that are inherently phylogenetic tree. This review aims towards providing guidance for these decisions, as wellPhylogenetic analysis h...
ED - Fyziologie
- 2016 •
- Jx •
- Link
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Výsledek na webu
Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae)
the species tree and stresses the utility of Hyb-Seq in phylogenetics.To facilitate the selection of orthologous low-copy nuclear (LCN) loci for phylogenetics in nonmodel organisms, we created an automated and int...
EF - Botanika
- 2016 •
- Jx •
- Link
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Výsledek na webu
Analyzer for reconstruction and evaluation of phylogenetic tree structure
Software for reconstruction and analysis of phylogenetic tree using several different methods with setting of input parameters as: scoring matrixes, distance matrix methods, algorithm for reconstruction, penalties for opening gaps e...
EB - Genetika a molekulární biologie
- 2010 •
- R
Rok uplatnění
R - Software
Comparative phylogenetic analysis of Apicomplexa based on 18s, 28s and contig 18s+28s rDNA
of several phylogenetic trees: 1. 18s that include large most available taxa; 2. 18s tree phylogenetic tree; 4. 18s+28s phylogenetic trees. Large 18s tree fits to a modern view ...
Zoology
- 2018 •
- O
Rok uplatnění
O - Ostatní výsledky
Tool for reconstruction of bootstrapping consensual tree
The program is tool for statistical testing the accuracy of the results of phylogenetic analysis using bootstrapping. On the basis of a statistical validation will improve accuracy of phylogenetic analysis using consensus bootstrapp...
EB - Genetika a molekulární biologie
- 2011 •
- R •
- Link
Rok uplatnění
R - Software
Výsledek na webu
Physcraper: a Python package for continually updated phylogenetic trees using the Open Tree of Life
specialists in the field of phylogenetics and non-specialists. However, interpretation of results, comparison with previously available phylogenetic hypotheses, and selection. Tools that automate some parts of the process ...
Plant sciences, botany
- 2021 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
Bioinformatics: a history of evolution in silico
of a phylogenetic tree with two examples; the two selected are from completely different groups. Nucleotide sequences are used to construct phylogenetic trees. In a case......
EB - Genetika a molekulární biologie
- 2012 •
- Jx •
- Link
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
Výsledek na webu
9TREE-PUZZLE: a computer program to reconstruct phylogenetic trees
9TREE-PUZZLE is a computer program to reconstruct phylogenetic trees from inspired by the original TREE-PUZZLE: "Schmidt, H.A., K. Strimmer, M. Vingron, and A. von Haeseler (2002) TREE-PUZZLE: maximum likelihood
EG - Zoologie
- 2007 •
- X
Rok uplatnění
X - Nezařazeno
Utilizing paralogues for phylogenetic reconstruction has the potential to increase species tree support and reduce gene tree discordance in target enrichment data
The analysis of target enrichment data in phylogenetics lacks optimization toward using paralogues for phylogenetic reconstruction. We developed a novel approach of detecting paralogues and utilizing them for phylogenetic <...
Plant sciences, botany
- 2022 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
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