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cpPredictor: a web server for template-based prediction of RNA secondary structure
method for prediction of secondary structure of RNA. The method outperforms available prediction methods as it uses RNA structures of related molecules, either predicted) prediction of RNA
Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
- 2019 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
Template-based prediction of RNA tertiary structure using its predicted secondary structure
We present improved methodology for prediction of medium and large sized RNA three dimensional structures, based on comparative modeling approach. Method is enriched by the prediction of secondary structure, which is then u...
Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
- 2017 •
- D •
- Link
Rok uplatnění
D - Stať ve sborníku
Výsledek na webu
rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots
address this difficult situation with rPredictorDB, a predictive database of RNA prediction of RNA secondary structure for the homologs of the RNA families with at leastSecondary data structure of RNA...
Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
- 2019 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
Biocomputational prediction of small non-coding RNAs in Streptomyces
The first systematic study of small non-coding RNAs (sRNA, ncRNA) in Streptomyces is presented. Thirty-two potential sRNAs in Streptomyces were predicted. Of these, expression of 20 was detected by microarrays and RT-PCR. One pr...
IN - Informatika
- 2008 •
- Jx
Rok uplatnění
Jx - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
An Algorithm for Template-Based Prediction of Secondary Structures of Individual RNA Sequences
While understanding the structure of RNA molecules is vital for deciphering their functions, determining RNA structures experimentally is exceptionally hard. At the same time, extant approaches to computational RNA structur...
Microbiology
- 2017 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
Template-based prediction of RNA tertiary structure
RNA tertiary structure prediction approaches can be divided into two groups: de structure prediction field, there exist only very few tools for template-based RNA structure prediction. Therefore, we presen...
EE - Mikrobiologie, virologie
- 2016 •
- D
Rok uplatnění
D - Stať ve sborníku
Small RNA Targets: Advances in Prediction Tools and High-Throughput Profiling
strategies utilized for small RNA target prediction. Furthermore, we report the recentSimple Summary MicroRNAs (miRNAs) are a category of small RNAs (sRNAs the Argonaute family, miRNAs target messenger RNAs (mRNAs...
Biological sciences
- 2022 •
- Jimp •
- Link
Rok uplatnění
Jimp - Článek v periodiku v databázi Web of Science
Výsledek na webu
rPredictor
rPredictor is a bioinformatical infrastructure consisting of tools, a database and this web interface that together enable predicting ribosomal RNA secondary structure and analysing it. The predicted structures, their analy...
IN - Informatika
- 2014 •
- R •
- Link
Rok uplatnění
R - Software
Výsledek na webu
R2DT - framework for predicting and visualising RNA secondary structure using templates
The R2DT software (RNA 2D Templates) automatically generates RNA secondary structure diagrams in standard layouts using a template library representing a wide range of RNAs....
Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
- 2021 •
- R •
- Link
Rok uplatnění
R - Software
Výsledek na webu
Template-based prediction of ribosomal RNA secondary structure
Determining the structure of ribosomal RNAs (rRNAs) is one of the crucial steps prediction of 3D rRNA structure is almost impossible, and prediction of secondary structure (the list of base pairs in the folded RNA)...
IN - Informatika
- 2014 •
- D •
- Link
Rok uplatnění
D - Stať ve sborníku
Výsledek na webu
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