Biocomputational prediction of intergenic structures in Actinomyces
Project goals
The proposed project is aimed at the biocomputational prediction and identification of functional intergenic structures as transcription terminators, small RNAs, riboswitches and antisense RNAs in the intergenic regions in Actinomyces genomes. The Actinomycetes is a very divers bacterial class, including pathogens, differentiating bacteria, producers of antibiotics and amino acids, with large genomes. Therefore, a large number of functional intergenic structures is expected in Actinomyces, forming a complex and unique regulatory apparatus. The structures will be predicted in Actinomyces intergenic regions based on sequence conservation and genomic features, specific for the functional structures. Identification of the predicted structures will be basedon sequence and structure similarity to known intergenic structures of other bacterial species in public databases. Besides the new Actinomyces structures themselves, a new database of the structures will be established.
Keywords
Public support
Provider
Czech Science Foundation
Programme
Standard projects
Call for proposals
Standardní projekty 12 (SGA02009GA-ST)
Main participants
—
Contest type
VS - Public tender
Contract ID
303/09/0475
Alternative language
Project name in Czech
Bioinformatická předpověď intergenových struktur u aktinomycet
Annotation in Czech
1. Systematická bioinformatická předpověď funkčních mezigenových RNA struktur u aktinomycet. 2. Nově předpovězené RNA struktury u aktinomycet. 3. Nové identifikované RNA struktury u aktinomycet. 4. Odborné publikace. 5. Datbáze identifikovaných RNA struktur u aktinomycet.
Scientific branches
Completed project evaluation
Provider evaluation
U - Uspěl podle zadání (s publikovanými či patentovanými výsledky atd.)
Project results evaluation
The project gone according to plan both in terms of expertise and in terms of disbursement of funds.
Solution timeline
Realization period - beginning
Jan 1, 2009
Realization period - end
Dec 31, 2011
Project status
U - Finished project
Latest support payment
Apr 16, 2011
Data delivery to CEP
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data delivery code
CEP12-GA0-GA-U/02:2
Data delivery date
May 2, 2016
Finance
Total approved costs
2,112 thou. CZK
Public financial support
2,112 thou. CZK
Other public sources
0 thou. CZK
Non public and foreign sources
0 thou. CZK
Basic information
Recognised costs
2 112 CZK thou.
Public support
2 112 CZK thou.
100%
Provider
Czech Science Foundation
CEP
CE - Biochemistry
Solution period
01. 01. 2009 - 31. 12. 2011